Detailed information NTG1027091

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA5486_RS08500
• Genome accession: NZ_LS998783
• Coordinates: 1715741..1716745 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1710741..1721745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA5486_RS08470 (PA5486_01636)	fghA	1710833..1711684 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PA5486_RS08475 (PA5486_01637)	ispF	1711755..1712228 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA5486_RS08480 (PA5486_01638)	truD	1712225..1713292 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PA5486_RS08485 (PA5486_01639)	surE	1713280..1714029 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA5486_RS08490 (PA5486_01640)	-	1714062..1714697 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA5486_RS08495 (PA5486_01641)	-	1714743..1715636 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA5486_RS08500 (PA5486_01642)	rpoS	1715741..1716745 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA5486_RS08505 (PA5486_01644)	fdxA	1717172..1717495 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PA5486_RS08510 (PA5486_01645)	mutS	1717562..1720129 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PA5486_RS08520 (PA5486_01646)	-	1720255..1721262 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1027091 PA5486_RS08500 WP_003113871.1 1715741..1716745(+) (rpoS) [Pseudomonas aeruginosa isolate]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1027091 PA5486_RS08500 WP_003113871.1 1715741..1716745(+) (rpoS) [Pseudomonas aeruginosa isolate]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653