Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA5486_RS07220 Genome accession   NZ_LS998783
Coordinates   1466685..1467194 (+) Length   169 a.a.
NCBI ID   WP_009616213.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461685..1472194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS07210 (PA5486_01394) - 1464566..1465375 (+) 810 WP_033871936.1 hypothetical protein -
  PA5486_RS07215 (PA5486_01395) - 1465473..1466069 (-) 597 WP_023087044.1 hypothetical protein -
  PA5486_RS07220 (PA5486_01396) radC 1466685..1467194 (+) 510 WP_009616213.1 RadC family protein Machinery gene
  PA5486_RS07225 (PA5486_01397) - 1467247..1468056 (-) 810 WP_025297663.1 hypothetical protein -
  PA5486_RS07235 (PA5486_01398) - 1468650..1469480 (+) 831 WP_025297664.1 DUF932 domain-containing protein -
  PA5486_RS07240 (PA5486_01399) - 1469560..1471593 (+) 2034 WP_025297665.1 ParB/RepB/Spo0J family partition protein -
  PA5486_RS07245 (PA5486_01400) - 1471837..1472034 (-) 198 WP_023087048.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18757.41 Da        Isoelectric Point: 5.9951

>NTDB_id=1027090 PA5486_RS07220 WP_009616213.1 1466685..1467194(+) (radC) [Pseudomonas aeruginosa isolate]
MSQLSFSSFDAMLLVRDAQGRYLPASADQILNMARQVIDQKYQRGALFTSPELVKDYLRTKLAGFEHEVFAALFLDSQHR
LLEYVELFRGTIDAAAVYPREVVKEALRVNAAAVIFSHNHPSGNPEPSQADKVLTQRLKEALALVDVRTLDHIIVGGEAT
ASFAEQGLL

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1027090 PA5486_RS07220 WP_009616213.1 1466685..1467194(+) (radC) [Pseudomonas aeruginosa isolate]
ATGTCGCAACTTTCCTTTTCCTCGTTCGATGCCATGCTGCTGGTGCGTGATGCACAGGGGCGCTACCTGCCTGCGTCTGC
AGATCAGATCCTGAATATGGCGCGTCAGGTGATCGACCAGAAATACCAGCGTGGAGCGTTGTTCACGTCGCCGGAGCTGG
TCAAGGACTACCTGCGCACCAAACTGGCTGGTTTTGAGCACGAGGTGTTTGCGGCGCTATTCCTCGACAGCCAGCATCGG
CTGCTTGAGTATGTGGAGTTGTTTCGCGGCACCATCGATGCGGCGGCGGTGTATCCACGGGAAGTAGTGAAGGAGGCACT
GCGCGTCAACGCAGCGGCGGTGATTTTCTCGCACAACCATCCGAGCGGAAATCCAGAGCCCAGCCAGGCAGATAAGGTGC
TGACCCAGCGCCTCAAGGAGGCCCTGGCGCTGGTGGATGTGCGCACGCTGGATCACATCATCGTGGGTGGCGAGGCAACT
GCATCATTCGCAGAGCAGGGGCTGCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.571

82.84

0.402