Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB3N04_RS11970 Genome accession   NZ_CP162551
Coordinates   2055241..2056194 (+) Length   317 a.a.
NCBI ID   WP_368503007.1    Uniprot ID   A0AB39BNW7
Organism   Alkalihalophilus sp. As8PL     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050241..2061194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS11960 (AB3N04_11960) - 2051297..2052958 (+) 1662 WP_368503005.1 alpha-glucosidase -
  AB3N04_RS11965 (AB3N04_11965) - 2053521..2055029 (+) 1509 WP_368503006.1 DEAD/DEAH box helicase -
  AB3N04_RS11970 (AB3N04_11970) ceuB 2055241..2056194 (+) 954 WP_368503007.1 ABC transporter permease Machinery gene
  AB3N04_RS11975 (AB3N04_11975) - 2056184..2057131 (+) 948 WP_368503008.1 iron chelate uptake ABC transporter family permease subunit -
  AB3N04_RS11980 (AB3N04_11980) - 2057125..2057883 (+) 759 WP_368503009.1 ABC transporter ATP-binding protein -
  AB3N04_RS11985 (AB3N04_11985) - 2057950..2058963 (+) 1014 WP_368503010.1 siderophore ABC transporter substrate-binding protein -
  AB3N04_RS11990 (AB3N04_11990) - 2059084..2059965 (+) 882 WP_368503011.1 NAD(P)-dependent oxidoreductase -
  AB3N04_RS11995 (AB3N04_11995) - 2060032..2060484 (+) 453 WP_368503012.1 DinB family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34852.16 Da        Isoelectric Point: 10.0674

>NTDB_id=1027084 AB3N04_RS11970 WP_368503007.1 2055241..2056194(+) (ceuB) [Alkalihalophilus sp. As8PL]
MKITYLVLLFIVLSIVSLFVGVSSISPLEVFSMTEEQAHIFLTSRIPRLVSIIIAGVGMSICGLIMQQLTRNKFVSPTTA
GTLDSARLGILVSMILFASASPLHKMIIAFLFALAGTFIFMKILERIKFKNTIFIPLVGLMFGNIVGSITTFFAYRYDLI
QNMSSWLQGNFAVIIRGRYELLYISIPLLILAYIFANRFTIAGMGEEFSKNLGLKYKQVVNIGLVIVAAITSVVVLTVGM
IPFLGLIIPNIVTIYKGDNLRENLPHTALLGAVFVLACDILGRIIIYPYEIPIGLTVGVIGSGIFLYLLLGRAKHGF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1027084 AB3N04_RS11970 WP_368503007.1 2055241..2056194(+) (ceuB) [Alkalihalophilus sp. As8PL]
ATGAAGATTACATACTTAGTGTTGTTGTTTATTGTGTTATCAATTGTTTCATTGTTTGTAGGTGTGTCTAGTATTTCGCC
TTTAGAAGTATTTAGTATGACGGAGGAGCAAGCGCATATCTTTTTAACGAGTCGCATTCCTCGTCTAGTCAGTATCATCA
TTGCTGGTGTAGGGATGAGTATATGCGGATTAATTATGCAGCAGTTAACGAGAAATAAATTTGTTTCTCCGACTACTGCA
GGGACTCTAGATTCTGCCCGGCTAGGAATCTTAGTGAGTATGATTTTGTTTGCATCAGCTAGTCCGCTTCACAAAATGAT
TATTGCCTTTCTTTTTGCCTTAGCTGGTACATTCATATTTATGAAAATACTTGAGCGAATTAAATTTAAAAACACCATTT
TCATTCCACTCGTGGGCTTGATGTTTGGAAATATCGTCGGGTCGATCACCACATTCTTTGCTTATCGATATGACTTAATC
CAGAACATGTCATCTTGGCTACAAGGGAACTTTGCTGTCATAATTCGCGGGCGATATGAGTTGTTGTACATAAGCATTCC
ACTACTTATTCTTGCGTACATATTCGCAAACCGCTTTACCATTGCGGGGATGGGTGAGGAGTTTTCAAAGAATTTAGGGT
TGAAGTACAAACAAGTCGTAAACATTGGTTTAGTGATTGTGGCAGCTATTACATCAGTCGTAGTCCTCACAGTGGGAATG
ATTCCATTTTTGGGATTGATTATTCCTAATATCGTAACGATTTACAAAGGAGATAATTTAAGAGAAAACTTACCTCACAC
GGCTTTATTAGGTGCAGTCTTCGTATTGGCTTGTGATATTCTTGGACGAATTATTATTTATCCATATGAGATCCCAATTG
GCTTAACAGTCGGTGTCATTGGAAGTGGAATCTTTCTTTATCTGTTACTTGGGAGAGCAAAACATGGGTTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment