Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PA5486_RS02530 Genome accession   NZ_LS998783
Coordinates   508192..508557 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa isolate     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503192..513557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS02500 (PA5486_00469) ruvX 503335..503769 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PA5486_RS02505 (PA5486_00470) - 503769..504338 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PA5486_RS02510 (PA5486_00471) - 504387..505280 (-) 894 WP_015649761.1 energy transducer TonB -
  PA5486_RS02515 (PA5486_00472) gshB 505427..506380 (-) 954 WP_003100943.1 glutathione synthase -
  PA5486_RS02520 (PA5486_00473) - 506671..507687 (+) 1017 WP_032728035.1 IS30-like element IS1394 family transposase -
  PA5486_RS02525 (PA5486_00474) pilG 507738..508145 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PA5486_RS02530 (PA5486_00475) pilH 508192..508557 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PA5486_RS02535 (PA5486_00476) - 508608..509144 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PA5486_RS02540 (PA5486_00477) pilJ 509229..511277 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PA5486_RS02545 (PA5486_00478) pilK 511338..512213 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=1027078 PA5486_RS02530 WP_003084587.1 508192..508557(+) (pilH) [Pseudomonas aeruginosa isolate]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1027078 PA5486_RS02530 WP_003084587.1 508192..508557(+) (pilH) [Pseudomonas aeruginosa isolate]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGATGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364