Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3N04_RS10890 Genome accession   NZ_CP162551
Coordinates   1840858..1842234 (-) Length   458 a.a.
NCBI ID   WP_317123841.1    Uniprot ID   A0AB39BZH4
Organism   Alkalihalophilus sp. As8PL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835858..1847234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS10870 (AB3N04_10870) ispF 1837138..1837617 (-) 480 WP_368505967.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AB3N04_RS10875 (AB3N04_10875) ispD 1837620..1838306 (-) 687 WP_368505968.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB3N04_RS10880 (AB3N04_10880) - 1838503..1839597 (-) 1095 WP_368505969.1 PIN/TRAM domain-containing protein -
  AB3N04_RS10885 (AB3N04_10885) disA 1839779..1840852 (-) 1074 WP_317123840.1 DNA integrity scanning diadenylate cyclase DisA -
  AB3N04_RS10890 (AB3N04_10890) radA 1840858..1842234 (-) 1377 WP_317123841.1 DNA repair protein RadA Machinery gene
  AB3N04_RS10895 (AB3N04_10895) clpC 1842384..1844825 (-) 2442 WP_368505970.1 ATP-dependent protease ATP-binding subunit ClpC -
  AB3N04_RS10900 (AB3N04_10900) - 1844843..1845919 (-) 1077 WP_368505971.1 protein arginine kinase -
  AB3N04_RS10905 (AB3N04_10905) - 1845924..1846454 (-) 531 WP_368505972.1 UvrB/UvrC motif-containing protein -
  AB3N04_RS10910 (AB3N04_10910) - 1846488..1846958 (-) 471 WP_317123845.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49578.15 Da        Isoelectric Point: 6.9536

>NTDB_id=1027075 AB3N04_RS10890 WP_317123841.1 1840858..1842234(-) (radA) [Alkalihalophilus sp. As8PL]
MAKKKTKFVCQECGYESAKWMGKCPGCQGWNTMVEEFEPSAKQSSRSYVTSGATQGTKPQAITSIVSETEPRVNTTMVEL
NRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSAKLAETNEKVLYISGEESVKQTKLRADRLNLASANLYVLAETDLSFIE
RAIDEVEPALVIIDSIQTVYQDDISSAPGSVAQVRECTAAFMKIAKTRGIAIFIVGHVTKQGSIAGPKLLEHMVDSVLYF
EGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVLNPSEIFLEERSKGAAGSIVVASMEGTRPVLVELQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLNVAGGVRLDEPAIDLAIALSIASSFRNQVTSPTDVAIGEIGLT
GEIRRVSRIDQRVNEAAKLGFKRAIIPEKNLGGWTVPKGIEVIGVPTVERALEVVLGR

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1027075 AB3N04_RS10890 WP_317123841.1 1840858..1842234(-) (radA) [Alkalihalophilus sp. As8PL]
TTGGCGAAGAAGAAAACCAAATTTGTTTGTCAGGAATGTGGCTATGAATCGGCTAAATGGATGGGGAAATGTCCAGGGTG
TCAAGGTTGGAATACGATGGTTGAGGAGTTTGAACCGAGTGCTAAACAATCTAGCCGGAGTTATGTTACTTCTGGTGCTA
CCCAAGGGACAAAGCCACAAGCTATTACGTCTATAGTGAGTGAAACCGAACCTAGGGTCAATACAACCATGGTGGAGTTA
AATCGAGTTCTTGGTGGAGGGATTGTACCAGGTTCACTTGTATTAGTAGGGGGCGACCCAGGGATTGGGAAGTCTACGTT
GTTACTCCAGTTATCAGCTAAGCTAGCTGAAACAAATGAAAAAGTTCTCTATATATCAGGTGAAGAGTCAGTTAAGCAAA
CAAAATTACGTGCAGACCGACTCAATCTCGCTTCAGCTAATCTGTATGTATTGGCAGAAACCGATCTAAGCTTTATCGAA
CGAGCAATTGATGAAGTTGAGCCTGCATTAGTCATTATAGACTCGATTCAAACGGTGTATCAAGATGATATATCATCGGC
ACCTGGAAGTGTGGCTCAAGTAAGAGAATGTACAGCAGCATTCATGAAGATTGCTAAAACACGTGGAATCGCTATTTTTA
TAGTGGGTCATGTAACAAAGCAGGGTTCAATCGCTGGACCTAAACTTCTTGAACATATGGTAGATTCTGTTTTGTATTTT
GAGGGCGAACGTCATCATACATATCGAATTCTACGAGCTGTAAAGAATCGATTTGGTTCAACCAATGAAATGGGTATATT
TGAAATGAAGGAACTAGGGCTTGAAGAAGTATTAAACCCATCAGAAATCTTTCTTGAAGAGCGATCAAAAGGGGCGGCAG
GATCAATTGTAGTGGCATCGATGGAAGGTACACGTCCTGTTCTTGTAGAACTACAGGCCCTCATATCTCCAACCAGTTTC
GGAAACCCTAGAAGAATGGCAACGGGAATAGACCATAATCGAGTCTCTCTTTTAATGGCAGTTCTAGAAAAACGCGTTGG
ATTGCTCTTACAAAATCAAGACGCTTATCTAAATGTAGCTGGTGGTGTCCGCTTAGATGAACCGGCAATTGATTTAGCGA
TTGCTTTAAGTATTGCGTCAAGCTTTCGTAATCAAGTGACAAGTCCCACAGATGTCGCTATTGGAGAAATTGGGCTAACA
GGAGAAATTCGACGTGTGTCTAGAATAGACCAGCGGGTTAATGAAGCGGCTAAATTAGGATTTAAGCGAGCAATCATACC
TGAGAAGAACTTAGGAGGTTGGACTGTGCCAAAAGGCATTGAAGTCATAGGAGTACCAACTGTAGAGCGTGCGCTTGAGG
TTGTGTTAGGGAGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-430)

AAA domain (AAA_25)

(73-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.398

99.782

0.742
  radA Streptococcus pneumoniae Rx1

60.088

99.563

0.598
  radA Streptococcus pneumoniae D39

60.088

99.563

0.598
  radA Streptococcus pneumoniae R6

60.088

99.563

0.598
  radA Streptococcus pneumoniae TIGR4

60.088

99.563

0.598
  radA Streptococcus mitis NCTC 12261

60.088

99.563

0.598
  radA Streptococcus mitis SK321

59.868

99.563

0.596

Multiple sequence alignment