Detailed information NTG1027071

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: PA5486_RS00100
• Genome accession: NZ_LS998783
• Coordinates: 21230..22255 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa isolate
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16230..27255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA5486_RS00075 (PA5486_00015)	-	16418..16735 (-)	318	WP_003120685.1	tetratricopeptide repeat protein	-
PA5486_RS00080 (PA5486_00016)	trkA	16884..18257 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
PA5486_RS00085 (PA5486_00017)	rsmB	18285..19589 (-)	1305	WP_016561456.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
PA5486_RS00090 (PA5486_00018)	fmt	19586..20530 (-)	945	WP_009316076.1	methionyl-tRNA formyltransferase	-
PA5486_RS00095 (PA5486_00019)	def	20585..21091 (-)	507	WP_003107059.1	peptide deformylase	-
PA5486_RS00100 (PA5486_00020)	tsaP	21230..22255 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PA5486_RS00105 (PA5486_00021)	dprA	22390..23478 (+)	1089	WP_003123764.1	DNA-processing protein DprA	Machinery gene
PA5486_RS00110 (PA5486_00022)	-	23519..24076 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
PA5486_RS00115 (PA5486_00023)	-	24086..25063 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
PA5486_RS00120 (PA5486_00024)	hemF	25254..26171 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
PA5486_RS00125 (PA5486_00025)	aroE	26229..27053 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=1027071 PA5486_RS00100 WP_003097294.1 21230..22255(+) (tsaP) [Pseudomonas aeruginosa isolate]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=1027071 PA5486_RS00100 WP_003097294.1 21230..22255(+) (tsaP) [Pseudomonas aeruginosa isolate]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393