Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AB3473_RS04395 Genome accession   NZ_CP162537
Coordinates   931522..932238 (-) Length   238 a.a.
NCBI ID   WP_002507139.1    Uniprot ID   -
Organism   Staphylococcus equorum strain UPB 1351     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 926522..937238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3473_RS04375 (AB3473_04375) - 927609..927836 (+) 228 WP_002507135.1 sulfurtransferase TusA family protein -
  AB3473_RS04380 (AB3473_04380) - 927980..928942 (+) 963 WP_002507136.1 LacI family DNA-binding transcriptional regulator -
  AB3473_RS04385 (AB3473_04385) - 929035..930519 (+) 1485 WP_398574330.1 sucrose-6-phosphate hydrolase -
  AB3473_RS04390 (AB3473_04390) - 930516..931484 (+) 969 WP_002507138.1 carbohydrate kinase -
  AB3473_RS04395 (AB3473_04395) agrA 931522..932238 (-) 717 WP_002507139.1 quorum-sensing response regulator AgrA Regulator
  AB3473_RS04400 (AB3473_04400) agrC 932251..933546 (-) 1296 WP_398574332.1 quorum-sensing sensor histidine kinase AgrC -
  AB3473_RS04405 (AB3473_04405) agrD 933570..933707 (-) 138 WP_002507141.1 cyclic lactone autoinducer peptide AgrD -
  AB3473_RS04410 (AB3473_04410) - 933710..934279 (-) 570 WP_002507142.1 accessory gene regulator AgrB -
  AB3473_RS04415 (AB3473_04415) - 935039..935824 (-) 786 WP_002507143.1 carbon-nitrogen family hydrolase -
  AB3473_RS04420 (AB3473_04420) - 936058..936687 (-) 630 WP_002507144.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.75 Da        Isoelectric Point: 4.9764

>NTDB_id=1027015 AB3473_RS04395 WP_002507139.1 931522..932238(-) (agrA) [Staphylococcus equorum strain UPB 1351]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1027015 AB3473_RS04395 WP_002507139.1 931522..932238(-) (agrA) [Staphylococcus equorum strain UPB 1351]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCCGATCCTTATGAAGTTTTAGAGCGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCCGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAAGCACGACCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAGTAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCATTTAGACAATAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGGTGTCATAACAGTTTCGTTGTTAACAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAACCAAGAACATTGCTTTGCTTCAGTAAGAAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866

Multiple sequence alignment