Detailed information NTG1027007

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECTO217_RS05625
• Genome accession: NZ_LS992192
• Coordinates: 1156590..1157582 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate Escherichia coli str. TO217
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1151590..1162582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECTO217_RS05595 (ECTO217_01121)	ispD	1151651..1152361 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ECTO217_RS05600 (ECTO217_01122)	ispF	1152361..1152840 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECTO217_RS05605 (ECTO217_01123)	truD	1152837..1153886 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ECTO217_RS05610 (ECTO217_01124)	surE	1153867..1154628 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECTO217_RS05615 (ECTO217_01125)	pcm	1154622..1155248 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECTO217_RS05620 (ECTO217_01126)	nlpD	1155433..1156527 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ECTO217_RS05625 (ECTO217_01127)	rpoS	1156590..1157582 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECTO217_RS05630 (ECTO217_01128)	-	1157753..1158304 (-)	552	WP_001179444.1	flavodoxin family protein	-
ECTO217_RS05635 (ECTO217_01129)	-	1158529..1159572 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ECTO217_RS05640 (ECTO217_01130)	ygbN	1159715..1161079 (-)	1365	WP_000104433.1	GntP family transporter	-
ECTO217_RS05645 (ECTO217_01131)	ygbM	1161168..1161944 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1027007 ECTO217_RS05625 WP_000081550.1 1156590..1157582(+) (rpoS) [Escherichia coli isolate Escherichia coli str. TO217]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1027007 ECTO217_RS05625 WP_000081550.1 1156590..1157582(+) (rpoS) [Escherichia coli isolate Escherichia coli str. TO217]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715