Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB3469_RS14910 Genome accession   NZ_CP162532
Coordinates   3151447..3152952 (+) Length   501 a.a.
NCBI ID   WP_396329101.1    Uniprot ID   -
Organism   Burkholderia anthina strain LMG 22950     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3146447..3157952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3469_RS14885 (AB3469_14885) kdsD 3147683..3148666 (+) 984 WP_175781431.1 arabinose 5-phosphate isomerase KdsD -
  AB3469_RS14890 (AB3469_14890) - 3148666..3149202 (+) 537 WP_396329098.1 KdsC family phosphatase -
  AB3469_RS14895 (AB3469_14895) lptC 3149206..3149820 (+) 615 WP_396329099.1 LPS export ABC transporter periplasmic protein LptC -
  AB3469_RS14900 (AB3469_14900) lptA 3149841..3150506 (+) 666 WP_175781427.1 lipopolysaccharide transport periplasmic protein LptA -
  AB3469_RS14905 (AB3469_14905) lptB 3150503..3151279 (+) 777 WP_396329100.1 LPS export ABC transporter ATP-binding protein -
  AB3469_RS14910 (AB3469_14910) rpoN/rpoN1 3151447..3152952 (+) 1506 WP_396329101.1 RNA polymerase factor sigma-54 Machinery gene
  AB3469_RS14915 (AB3469_14915) hpf 3153112..3153471 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AB3469_RS14920 (AB3469_14920) - 3153667..3154179 (+) 513 WP_059451610.1 PTS sugar transporter subunit IIA -
  AB3469_RS14925 (AB3469_14925) hprK 3154309..3155277 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  AB3469_RS14930 (AB3469_14930) rapZ 3155353..3156261 (+) 909 WP_096507360.1 RNase adapter RapZ -
  AB3469_RS14935 (AB3469_14935) - 3156289..3156924 (+) 636 WP_098550555.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54847.99 Da        Isoelectric Point: 4.8767

>NTDB_id=1027000 AB3469_RS14910 WP_396329101.1 3151447..3152952(+) (rpoN/rpoN1) [Burkholderia anthina strain LMG 22950]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAIAQNPLLENDDEWIASPLRVAADGSLIAQTPPAQNTEPGA
TNGSSQSGERAERDEPAGADEYDGYASGDNNDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLTASLDEVLADLPAELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIMVKKSGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=1027000 AB3469_RS14910 WP_396329101.1 3151447..3152952(+) (rpoN/rpoN1) [Burkholderia anthina strain LMG 22950]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATTTGGCGCTGACGCCGCAGCTACAGCAGTCGATCCGGCTTCTGCA
GTTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCATCGCGCAGAATCCACTGCTCGAAAACGACGATGAATGGA
TCGCGAGTCCGCTGCGTGTCGCGGCGGATGGATCGCTGATCGCGCAAACGCCGCCCGCGCAGAACACCGAACCGGGCGCC
ACGAACGGCAGCAGCCAGTCGGGCGAGCGCGCCGAGCGCGACGAACCGGCCGGCGCCGACGAATACGACGGCTACGCGTC
CGGCGACAACAACGACGGCCCGCAGTGGAATCTCGACGAGTTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGACCTGC
CGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGACCATCTCTCCGCGCAACTGCGCGTCACGCAGGCGGGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
CGCCGATCTGCCGGCCGAGCTCGAAATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCCG
CCGGGGTCGGTGCGCGCTCGGCATCCGAGTGCCTGAAGCTGCAGTTGCTGCGCCTCGATCCGTCCCCCACCCGCACGCTC
GCGCTCGAAATCGTGTCGCAGCATCTCGAACTGCTCGCCGCGCGCGATTTCACGCGGCTGCGCAAGCACCTGAAGGCAAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCGGGCGCCGCCTACGGCAAGGCCGAAG
CCGACTACGTCGTGCCCGACATCATGGTGAAGAAGTCCGGCCAGGGCTGGCTCGCGGAACTCAATCCGGAAGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGACCCGTCGGCCGGATCGTTGAAACAGCA
GCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGCTTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AGCGTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACAGGCAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCACACGTTTCGACCGACACCGGAGGCGCCGCTTCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTTGCGCGC
CGCACGGTCGCCAAGTATCGCGAAGCCCTTAAAATCCCGGCAGTGAACCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.775

100

0.695

Multiple sequence alignment