Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3465_RS17315 Genome accession   NZ_CP162529
Coordinates   4155015..4156391 (+) Length   458 a.a.
NCBI ID   WP_173089781.1    Uniprot ID   -
Organism   Pedobacter foliorum strain LMG 31463     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4150015..4161391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3465_RS17290 (AB3465_17290) - 4150273..4150701 (-) 429 WP_173089785.1 single-stranded DNA-binding protein -
  AB3465_RS17295 (AB3465_17295) mutY 4150716..4151765 (-) 1050 WP_173089784.1 A/G-specific adenine glycosylase -
  AB3465_RS17300 (AB3465_17300) - 4151937..4152239 (+) 303 WP_008240139.1 HU family DNA-binding protein -
  AB3465_RS17305 (AB3465_17305) - 4152247..4153113 (+) 867 WP_173089783.1 tetratricopeptide repeat protein -
  AB3465_RS17310 (AB3465_17310) - 4153364..4154914 (+) 1551 WP_173089782.1 Rne/Rng family ribonuclease -
  AB3465_RS17315 (AB3465_17315) radA 4155015..4156391 (+) 1377 WP_173089781.1 DNA repair protein RadA Machinery gene
  AB3465_RS17320 (AB3465_17320) - 4156850..4157407 (+) 558 WP_173089780.1 LemA family protein -
  AB3465_RS17325 (AB3465_17325) - 4157407..4158372 (+) 966 WP_173089779.1 DUF3137 domain-containing protein -
  AB3465_RS17330 (AB3465_17330) carB 4158414..4161230 (-) 2817 WP_173089778.1 carbamoyl-phosphate synthase large subunit -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50377.92 Da        Isoelectric Point: 6.1947

>NTDB_id=1026979 AB3465_RS17315 WP_173089781.1 4155015..4156391(+) (radA) [Pedobacter foliorum strain LMG 31463]
MAKTKSAYFCQSCGYESAKWLGRCPSCNEWNTFVEEIIEKTSAKVPSWKTSTGTQRLNKPSKVDDIQSISEDRTLTGDLE
LDRVLGGGLVAGSVILIGGEPGIGKSTLMLQLALNISGKKILYVSGEESEQQIKMRAERITKSPKADCYILTETSTQNIF
KQIEALEPNIIIVDSIQTLHSSNIDSTPGSVSQVRECTAELLRFAKETDTPVFLIGHITKDGTIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYAMHSTGLREVSNPSEILLSQRDEEMSGIAISATLEGARPMLIETQALVSAAAY
GTPQRSANGFDTKRMNMLLAVLEKRCGFRLSTRDVFLNIAGGIKVEDPAIDLAIMVAIISSHEDIAISSKICFAAEVGLS
GEIRAVNRIEQRISEAEKLGFERIFISNYNLKGLILDRFKIEITPVRKIEDVFSLLFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1026979 AB3465_RS17315 WP_173089781.1 4155015..4156391(+) (radA) [Pedobacter foliorum strain LMG 31463]
TTGGCTAAAACTAAATCAGCATATTTCTGTCAAAGTTGTGGATATGAATCGGCAAAGTGGCTTGGAAGATGTCCATCTTG
TAATGAATGGAACACCTTTGTAGAGGAAATCATAGAGAAAACAAGTGCTAAAGTTCCTTCCTGGAAAACATCAACCGGTA
CCCAACGCTTAAATAAACCATCTAAAGTTGATGATATTCAATCTATAAGTGAAGACAGAACTTTAACAGGAGATCTGGAG
CTCGACAGAGTATTAGGAGGCGGCCTGGTTGCCGGATCAGTTATTCTAATAGGTGGAGAACCCGGCATTGGGAAATCTAC
ACTGATGCTTCAGTTGGCGCTAAATATCTCCGGCAAAAAAATCCTATACGTATCAGGTGAAGAAAGCGAACAGCAGATCA
AAATGAGAGCAGAACGCATCACTAAATCACCTAAGGCTGATTGCTATATCCTTACAGAAACTTCTACTCAAAATATTTTT
AAGCAAATTGAGGCCCTTGAACCGAACATCATAATAGTTGATTCGATACAAACCCTTCACTCCTCAAATATTGATTCAAC
CCCAGGAAGTGTGTCTCAGGTTAGAGAATGTACCGCCGAATTACTCAGGTTTGCAAAGGAAACTGATACCCCTGTATTTC
TAATCGGCCATATCACTAAAGACGGAACCATTGCAGGACCAAAAATCCTTGAACACATGGTTGACACTGTTTTACAATTT
GAAGGCGACAGACATCATGTATACCGTATTTTACGCTCTATAAAGAACCGTTTTGGTGCAGCGGCTGAATTGGGAATTTA
TGCCATGCATAGTACCGGTTTGAGAGAAGTATCCAACCCATCTGAAATCTTATTATCACAACGTGATGAAGAGATGAGCG
GAATTGCCATATCAGCTACTTTAGAAGGCGCCAGACCAATGTTAATAGAAACACAGGCGTTGGTTAGCGCAGCGGCATAC
GGAACGCCTCAGCGCTCAGCAAATGGCTTTGACACTAAAAGAATGAATATGCTCCTTGCCGTGCTGGAAAAAAGATGTGG
TTTTAGATTAAGTACTCGTGACGTATTCTTAAATATCGCCGGTGGTATTAAAGTTGAAGATCCAGCGATTGACCTCGCTA
TTATGGTTGCAATAATCTCTTCCCATGAGGATATAGCCATTTCTTCTAAAATTTGCTTTGCAGCTGAAGTTGGTCTATCC
GGAGAAATCAGAGCCGTTAATAGAATAGAGCAACGTATCTCTGAGGCAGAAAAACTTGGGTTCGAAAGAATCTTTATCTC
AAACTATAATTTAAAAGGGCTAATATTAGATCGATTTAAAATTGAGATAACTCCGGTAAGGAAAATTGAGGATGTATTTT
CATTACTATTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.644

94.978

0.5
  radA Streptococcus pneumoniae Rx1

49.127

100

0.491
  radA Streptococcus pneumoniae D39

49.127

100

0.491
  radA Streptococcus pneumoniae R6

49.127

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.127

100

0.491
  radA Streptococcus mitis SK321

49.127

100

0.491
  radA Streptococcus mitis NCTC 12261

48.908

100

0.489

Multiple sequence alignment