Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3468_RS07435 Genome accession   NZ_CP162526
Coordinates   1601215..1601841 (+) Length   208 a.a.
NCBI ID   WP_045134652.1    Uniprot ID   -
Organism   Enterobacter kobei strain UPB 1352     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596215..1606841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3468_RS07415 (AB3468_07420) - 1596613..1598373 (-) 1761 WP_048996937.1 Lon protease family protein -
  AB3468_RS07420 (AB3468_07425) matP 1598560..1599012 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  AB3468_RS07425 (AB3468_07430) ompA 1599077..1600132 (-) 1056 WP_014883252.1 porin OmpA -
  AB3468_RS07430 (AB3468_07435) sulA 1600488..1600997 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  AB3468_RS07435 (AB3468_07440) sxy/tfoX 1601215..1601841 (+) 627 WP_045134652.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3468_RS07440 (AB3468_07445) yccS 1601798..1603960 (-) 2163 WP_045134651.1 YccS family putative transporter -
  AB3468_RS07445 (AB3468_07450) - 1603980..1604426 (-) 447 WP_014883256.1 YccF domain-containing protein -
  AB3468_RS07450 (AB3468_07455) helD 1604550..1606604 (+) 2055 WP_045134650.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23916.50 Da        Isoelectric Point: 9.0691

>NTDB_id=1026958 AB3468_RS07435 WP_045134652.1 1601215..1601841(+) (sxy/tfoX) [Enterobacter kobei strain UPB 1352]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1026958 AB3468_RS07435 WP_045134652.1 1601215..1601841(+) (sxy/tfoX) [Enterobacter kobei strain UPB 1352]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGGTAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGTTAATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562

Multiple sequence alignment