Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AB3467_RS24070 Genome accession   NZ_CP162521
Coordinates   5563922..5564332 (-) Length   136 a.a.
NCBI ID   WP_025262261.1    Uniprot ID   -
Organism   Pseudomonas cichorii strain UPB 461     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5558922..5569332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3467_RS24055 (AB3467_23945) - 5560839..5562881 (-) 2043 WP_025262259.1 methyl-accepting chemotaxis protein -
  AB3467_RS24060 (AB3467_23950) - 5562960..5563499 (-) 540 WP_025262260.1 chemotaxis protein CheW -
  AB3467_RS24065 (AB3467_23955) pilH 5563514..5563879 (-) 366 WP_002551739.1 twitching motility response regulator PilH -
  AB3467_RS24070 (AB3467_23960) pilG 5563922..5564332 (-) 411 WP_025262261.1 twitching motility response regulator PilG Regulator
  AB3467_RS24075 (AB3467_23965) gshB 5564562..5565515 (+) 954 WP_025262262.1 glutathione synthase -
  AB3467_RS24080 (AB3467_23970) - 5565615..5566517 (+) 903 WP_038400078.1 energy transducer TonB -
  AB3467_RS24085 (AB3467_23975) - 5566593..5567162 (+) 570 WP_025262264.1 YqgE/AlgH family protein -
  AB3467_RS24090 (AB3467_23980) ruvX 5567162..5567605 (+) 444 WP_025262265.1 Holliday junction resolvase RuvX -
  AB3467_RS24095 (AB3467_23985) pyrR 5567706..5568224 (+) 519 WP_025262266.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AB3467_RS24100 (AB3467_23990) - 5568237..5569241 (+) 1005 WP_025262267.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15043.58 Da        Isoelectric Point: 8.5010

>NTDB_id=1026921 AB3467_RS24070 WP_025262261.1 5563922..5564332(-) (pilG) [Pseudomonas cichorii strain UPB 461]
MEQYATALKVMVIDDSKTVRRTAETLLKNVGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIKAHVPGFVAVEQQIS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1026921 AB3467_RS24070 WP_025262261.1 5563922..5564332(-) (pilG) [Pseudomonas cichorii strain UPB 461]
ATGGAACAGTACGCCACAGCATTGAAGGTCATGGTCATCGATGACTCGAAGACCGTTCGCCGTACCGCCGAAACGCTGCT
AAAGAACGTCGGCTGTGAAGTCATCACGGCAATAGACGGTTTCGATGCGTTGGCAAAGATCGCCGATAATCATCCGCGAA
TCATATTCGTCGATATCATGATGCCACGTCTGGACGGTTATCAGACCTGTGCACTGATCAAGAACAACAGGGCTTTCAAG
TCGACTCCAGTCATCATGCTTTCTTCCAAGGATGGATTGTTCGACAAGGCCAAGGGCAGGATCGTCGGTTCCGACCAGTT
TCTGACCAAGCCTTTCAGCAAGGAAGAGCTACTGAACGCCATCAAGGCCCACGTGCCCGGTTTCGTTGCGGTAGAACAAC
AAATTTCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

91.912

0.691

Multiple sequence alignment