Detailed information NTG0102686

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AW03_RS01525
• Genome accession: NZ_CP007173
• Coordinates: 279334..280455 (+)
• Length: 373 a.a.
• NCBI ID: WP_015382685.1
• Uniprot ID: -
• Organism: Bacillus subtilis HJ5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 274334..285455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AW03_RS21560	-	275417..275548 (-)	132	WP_003246334.1	hypothetical protein	-
AW03_RS01510 (AW03_002740)	ycdB	275722..277143 (+)	1422	WP_015382683.1	YcdB/YcdC domain-containing protein	-
AW03_RS01515 (AW03_002750)	ycdC	277330..278691 (+)	1362	WP_046340299.1	YcdB/YcdC domain-containing protein	-
AW03_RS01520 (AW03_002760)	cwlK	278699..279211 (-)	513	WP_041517631.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
AW03_RS01525 (AW03_002770)	rapF	279334..280455 (+)	1122	WP_015382685.1	response regulator aspartate phosphatase RapJ	Regulator
AW03_RS01530 (AW03_002780)	ycdF	280563..281339 (+)	777	WP_015382686.1	SDR family oxidoreductase	-
AW03_RS01535 (AW03_002790)	ycdG	281364..283049 (+)	1686	WP_015382687.1	alpha-glucosidase	-
AW03_RS01540 (AW03_002800)	znuA	283237..284196 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
AW03_RS01545 (AW03_002810)	znuC	284251..284946 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44444.30 Da
• Isoelectric Point: 4.7895

>NTDB_id=102686 AW03_RS01525 WP_015382685.1 279334..280455(+) (rapF) [Bacillus subtilis HJ5]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSADEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=102686 AW03_RS01525 WP_015382685.1 279334..280455(+) (rapF) [Bacillus subtilis HJ5]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGCCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGAGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGATGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405