Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB3470_RS13240 Genome accession   NZ_CP162517
Coordinates   2506179..2506982 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2501179..2511982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS13215 (AB3470_13215) glpQB 2502325..2503056 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  AB3470_RS13220 (AB3470_13220) yqiI 2503135..2503755 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  AB3470_RS13225 (AB3470_13225) yqiH 2503770..2504063 (-) 294 WP_003230284.1 lipoprotein -
  AB3470_RS13230 (AB3470_13230) - 2504371..2504523 (+) 153 WP_014480226.1 hypothetical protein -
  AB3470_RS13235 (AB3470_13235) yqiG 2504596..2505714 (+) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  AB3470_RS13240 (AB3470_13240) spo0A 2506179..2506982 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AB3470_RS13245 (AB3470_13245) spoIVB 2507258..2508538 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  AB3470_RS13250 (AB3470_13250) recN 2508712..2510442 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  AB3470_RS13255 (AB3470_13255) argR 2510479..2510928 (-) 450 WP_003230265.1 arginine repressor ArgR -
  AB3470_RS13260 (AB3470_13260) yqxC 2511026..2511871 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1026771 AB3470_RS13240 WP_003226427.1 2506179..2506982(-) (spo0A) [Bacillus subtilis strain BF12B1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1026771 AB3470_RS13240 WP_003226427.1 2506179..2506982(-) (spo0A) [Bacillus subtilis strain BF12B1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAAGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment