Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB3470_RS12250 Genome accession   NZ_CP162517
Coordinates   2329161..2329781 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2324161..2334781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS12210 (AB3470_12210) ptsA 2325292..2325798 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  AB3470_RS12215 (AB3470_12215) ypqA 2325936..2326355 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  AB3470_RS12220 (AB3470_12220) sppG 2326376..2326753 (-) 378 WP_004398696.1 YppG family protein -
  AB3470_RS12225 (AB3470_12225) yppF 2326941..2327129 (+) 189 WP_140599951.1 YppF family protein -
  AB3470_RS12230 (AB3470_12230) yppE 2327168..2327539 (-) 372 WP_003246080.1 YppE family protein -
  AB3470_RS12235 (AB3470_12235) yppD 2327585..2327830 (-) 246 WP_004398488.1 YppD family protein -
  AB3470_RS12240 (AB3470_12240) sspM 2328029..2328133 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB3470_RS12245 (AB3470_12245) yppC 2328158..2329120 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  AB3470_RS12250 (AB3470_12250) recU 2329161..2329781 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AB3470_RS12255 (AB3470_12255) ponA 2329803..2332547 (+) 2745 WP_029726784.1 transglycosylase domain-containing protein -
  AB3470_RS12260 (AB3470_12260) ypoC 2332623..2333117 (-) 495 WP_029726783.1 YpoC family protein -
  AB3470_RS12265 (AB3470_12265) nth 2333114..2333773 (-) 660 WP_029726782.1 endonuclease III -
  AB3470_RS12270 (AB3470_12270) dnaD 2333792..2334490 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1026770 AB3470_RS12250 WP_004399067.1 2329161..2329781(+) (recU) [Bacillus subtilis strain BF12B1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1026770 AB3470_RS12250 WP_004399067.1 2329161..2329781(+) (recU) [Bacillus subtilis strain BF12B1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment