Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB3470_RS04585 Genome accession   NZ_CP162517
Coordinates   895324..896118 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 890324..901118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS04555 (AB3470_04550) sxzA 891163..892194 (+) 1032 WP_003233568.1 iron chelate uptake ABC transporter family permease subunit -
  AB3470_RS04560 (AB3470_04555) yfhB 892309..893190 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  AB3470_RS04565 (AB3470_04560) yfhC 893278..893862 (+) 585 WP_003243940.1 nitroreductase -
  AB3470_RS04570 (AB3470_04565) yfhD 893901..894092 (-) 192 WP_003233561.1 YfhD family protein -
  AB3470_RS04575 (AB3470_04570) yfhE 894159..894269 (-) 111 WP_003223230.1 YfhE family protein -
  AB3470_RS04580 (AB3470_04575) yfhF 894324..895235 (-) 912 WP_029726845.1 TIGR01777 family oxidoreductase -
  AB3470_RS04585 (AB3470_04580) recX 895324..896118 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  AB3470_RS04590 (AB3470_04585) yfhH 896120..896440 (+) 321 WP_029726843.1 YfhH family protein -
  AB3470_RS04595 (AB3470_04590) yfhI 896577..897770 (+) 1194 WP_072692836.1 MFS transporter -
  AB3470_RS04600 (AB3470_04595) sspK 897802..897954 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  AB3470_RS04605 (AB3470_04600) yfhJ 898079..898348 (+) 270 WP_003243789.1 YfhJ family protein -
  AB3470_RS04610 (AB3470_04605) yfhK 898493..899011 (+) 519 WP_029726841.1 SH3 domain-containing protein -
  AB3470_RS04615 (AB3470_04610) spdL 899096..899413 (+) 318 WP_032679045.1 SdpC immunity protein SpdL -
  AB3470_RS04620 (AB3470_04615) ephM 899415..900275 (+) 861 WP_029726839.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=1026745 AB3470_RS04585 WP_029726844.1 895324..896118(+) (recX) [Bacillus subtilis strain BF12B1]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=1026745 AB3470_RS04585 WP_029726844.1 895324..896118(+) (recX) [Bacillus subtilis strain BF12B1]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAAATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996

Multiple sequence alignment