Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB3470_RS01980 Genome accession   NZ_CP162517
Coordinates   370264..370713 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain BF12B1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365264..375713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS01945 (AB3470_01945) yckA 365417..366097 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  AB3470_RS01950 (AB3470_01950) yckB 366107..366970 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  AB3470_RS01955 (AB3470_01955) - 367132..367329 (+) 198 WP_119122841.1 hypothetical protein -
  AB3470_RS01960 (AB3470_01960) yckC 367348..367803 (+) 456 WP_029727075.1 RDD family protein -
  AB3470_RS01965 (AB3470_01965) yckD 367885..368217 (+) 333 WP_015252849.1 YckD family protein -
  AB3470_RS01970 (AB3470_01970) bglC 368369..369802 (+) 1434 WP_029727076.1 6-phospho-beta-glucosidase -
  AB3470_RS01975 (AB3470_01975) nin/comJ 369839..370237 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  AB3470_RS01980 (AB3470_01980) nucA/comI 370264..370713 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  AB3470_RS01985 (AB3470_01985) tlpC 370881..372602 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  AB3470_RS01990 (AB3470_01990) hxlB 372713..373270 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  AB3470_RS01995 (AB3470_01995) hxlA 373276..373908 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  AB3470_RS02000 (AB3470_02000) hxlR 374141..374503 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=1026739 AB3470_RS01980 WP_003234608.1 370264..370713(-) (nucA/comI) [Bacillus subtilis strain BF12B1]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1026739 AB3470_RS01980 WP_003234608.1 370264..370713(-) (nucA/comI) [Bacillus subtilis strain BF12B1]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment