Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AS97_RS44255 Genome accession   NZ_CP007153
Coordinates   10368238..10369266 (-) Length   342 a.a.
NCBI ID   WP_059142301.1    Uniprot ID   -
Organism   Streptomyces sp. AgN23     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10363238..10374266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS97_RS44235 (AS97_19500) - 10364560..10364796 (+) 237 WP_148181136.1 hypothetical protein -
  AS97_RS44240 (AS97_59055) - 10365052..10365594 (+) 543 WP_059142298.1 PadR family transcriptional regulator -
  AS97_RS44245 (AS97_59060) - 10365591..10366430 (+) 840 WP_059142299.1 ABC transporter ATP-binding protein -
  AS97_RS44250 (AS97_59065) - 10366433..10368208 (+) 1776 WP_125756982.1 ABC transporter permease -
  AS97_RS44255 (AS97_59070) cytR 10368238..10369266 (-) 1029 WP_059142301.1 LacI family DNA-binding transcriptional regulator Regulator
  AS97_RS44260 (AS97_59075) - 10369845..10371155 (+) 1311 WP_086708767.1 extracellular solute-binding protein -
  AS97_RS44265 (AS97_59080) - 10371152..10372054 (+) 903 WP_059142302.1 sugar ABC transporter permease -
  AS97_RS44270 (AS97_59085) - 10372056..10372952 (+) 897 WP_210566895.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36338.38 Da        Isoelectric Point: 7.6535

>NTDB_id=102673 AS97_RS44255 WP_059142301.1 10368238..10369266(-) (cytR) [Streptomyces sp. AgN23]
MRPNTRRTTLADIAQAAGVSVATVSKVVNGRGDVAPRTRARVQELLHQHHYLAPVFRHTEAIESPTIEVQFKGGLKSYVA
EALEGIIDSAAELGASVVIGQASRAPHWARDLVSAGRRAVIAVTSVYTTAHLNELARAGLPLVVLDPLHLPDSRVNSVGA
TNFAGGLAATRHLLSLGHRRIAYLGGPTMAVCNQARMHGYRAAMEAEGAQVPDACVRPGEFTYETGLLGATELLGLQEPP
TAIFAGNDEIALGVIETARARGLRVPEDLSVVGFDDTSLAQMASPPLTTVRQPLREMGGAALRTALRLARGEKAESHHIE
LATELVVRASTAPPREETSAHR

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=102673 AS97_RS44255 WP_059142301.1 10368238..10369266(-) (cytR) [Streptomyces sp. AgN23]
ATGCGGCCGAACACCAGGCGGACCACTTTGGCGGACATCGCCCAAGCGGCCGGGGTCTCCGTCGCGACCGTGTCCAAAGT
GGTCAACGGTCGCGGTGACGTGGCGCCGCGGACCCGCGCCCGGGTACAGGAACTGCTGCATCAGCACCACTACCTCGCGC
CCGTGTTCCGCCACACCGAGGCCATCGAAAGCCCGACCATCGAAGTGCAGTTCAAGGGCGGCCTCAAGTCGTACGTGGCC
GAGGCCCTGGAAGGGATCATCGACTCCGCCGCCGAATTGGGGGCCTCGGTGGTGATCGGTCAGGCGTCCCGCGCCCCACA
CTGGGCCCGGGACCTGGTCTCAGCCGGGCGCCGCGCCGTCATCGCGGTCACCAGCGTGTACACCACAGCGCACCTGAACG
AACTGGCCCGGGCCGGGCTGCCGCTGGTCGTGCTGGACCCACTGCACCTGCCAGACAGCCGGGTCAACAGCGTCGGGGCG
ACCAACTTCGCCGGCGGCCTGGCCGCGACCCGGCACCTGCTCTCCCTGGGCCACCGCCGCATCGCCTATCTCGGCGGACC
GACCATGGCCGTGTGCAACCAGGCACGCATGCACGGCTACCGTGCCGCCATGGAGGCGGAAGGAGCGCAGGTACCCGACG
CCTGCGTCCGGCCCGGAGAATTCACGTACGAGACCGGGTTGCTCGGCGCCACGGAACTCCTGGGCCTGCAAGAGCCACCG
ACGGCGATCTTCGCAGGCAACGACGAGATCGCCCTCGGTGTCATCGAGACCGCCCGCGCCCGAGGGCTGCGCGTCCCCGA
AGACCTGAGCGTGGTCGGCTTCGACGACACAAGCCTTGCCCAGATGGCCTCACCGCCACTGACCACCGTGCGCCAGCCAC
TACGGGAGATGGGTGGTGCCGCCCTGCGTACCGCCCTCCGACTGGCCAGAGGCGAGAAGGCCGAGTCCCATCACATCGAA
CTCGCCACCGAACTCGTGGTACGCGCCTCGACGGCGCCGCCCCGCGAAGAGACTTCGGCGCATAGATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-331)

Bacterial regulatory proteins, lacI family (LacI)

(9-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.015

97.953

0.363