Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB1M50_RS06960 Genome accession   NZ_CP162502
Coordinates   1531871..1532506 (+) Length   211 a.a.
NCBI ID   WP_023533075.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY5518     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526871..1537506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1M50_RS06940 (AB1M50_06940) - 1527226..1528158 (+) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  AB1M50_RS06945 (AB1M50_06945) - 1528155..1528934 (+) 780 WP_023533108.1 ABC transporter permease -
  AB1M50_RS06950 (AB1M50_06950) - 1528818..1529450 (-) 633 WP_115933573.1 DUF2062 domain-containing protein -
  AB1M50_RS06955 (AB1M50_06955) comA 1529593..1531809 (+) 2217 WP_088523030.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB1M50_RS06960 (AB1M50_06960) exbB 1531871..1532506 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB1M50_RS06965 (AB1M50_06965) - 1532503..1532937 (+) 435 WP_028687688.1 biopolymer transporter ExbD -
  AB1M50_RS06970 (AB1M50_06970) lpxK 1532937..1533938 (+) 1002 WP_181074058.1 tetraacyldisaccharide 4'-kinase -
  AB1M50_RS06975 (AB1M50_06975) - 1533981..1534166 (+) 186 WP_003247142.1 Trm112 family protein -
  AB1M50_RS06980 (AB1M50_06980) kdsB 1534163..1534924 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB1M50_RS06985 (AB1M50_06985) - 1534924..1535388 (+) 465 WP_196110518.1 low molecular weight protein-tyrosine-phosphatase -
  AB1M50_RS06990 (AB1M50_06990) murB 1535385..1536404 (+) 1020 WP_196110519.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22847.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1026609 AB1M50_RS06960 WP_023533075.1 1531871..1532506(+) (exbB) [Pseudomonas fulva strain NY5518]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1026609 AB1M50_RS06960 WP_023533075.1 1531871..1532506(+) (exbB) [Pseudomonas fulva strain NY5518]
GTGTGGGAATTGGTCAAGTCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGTCCGCCTCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCTTGGGGGAGATCCTCGCGGCAGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGACCGCCAACGCCTCGGTGCTGGCGGGCGGTATTTCAAAGGCCCTGGTAACTACCGCA
GCCGGGCTGATGGTCGGTATCCCGGCGGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTGGAGGTGATTCAGGGGGACCGTGAGGTGGAAGTGGCGGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment