Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AB1M50_RS01670 Genome accession   NZ_CP162502
Coordinates   392537..392938 (+) Length   133 a.a.
NCBI ID   WP_027914036.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY5518     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 387537..397938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1M50_RS01640 (AB1M50_01640) - 387667..388671 (-) 1005 WP_027914040.1 aspartate carbamoyltransferase catalytic subunit -
  AB1M50_RS01645 (AB1M50_01645) pyrR 388684..389202 (-) 519 WP_023533003.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AB1M50_RS01650 (AB1M50_01650) ruvX 389252..389689 (-) 438 WP_023533019.1 Holliday junction resolvase RuvX -
  AB1M50_RS01655 (AB1M50_01655) - 389689..390258 (-) 570 WP_027914039.1 YqgE/AlgH family protein -
  AB1M50_RS01660 (AB1M50_01660) - 390305..391204 (-) 900 WP_027914038.1 energy transducer TonB -
  AB1M50_RS01665 (AB1M50_01665) gshB 391344..392297 (-) 954 WP_181073870.1 glutathione synthase -
  AB1M50_RS01670 (AB1M50_01670) pilG 392537..392938 (+) 402 WP_027914036.1 PleD family two-component system response regulator Regulator
  AB1M50_RS01675 (AB1M50_01675) pilH 392987..393352 (+) 366 WP_027914035.1 twitching motility response regulator PilH -
  AB1M50_RS01680 (AB1M50_01680) - 393349..393900 (+) 552 WP_027914034.1 chemotaxis protein CheW -
  AB1M50_RS01685 (AB1M50_01685) - 393913..395973 (+) 2061 WP_196113716.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14603.87 Da        Isoelectric Point: 5.1550

>NTDB_id=1026605 AB1M50_RS01670 WP_027914036.1 392537..392938(+) (pilG) [Pseudomonas fulva strain NY5518]
MEQPLKVMVIDDSRTIRRTAQMLLSEVGCEVITASDGFDALAKIVDHNPAVIFVDVLMPRLDGYQTCAVIKQNSTFKDVP
VILLSSRDGLFDKARGRVVGSDQFLTKPFTKEELIEAIQAHVPGFATAQQTAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1026605 AB1M50_RS01670 WP_027914036.1 392537..392938(+) (pilG) [Pseudomonas fulva strain NY5518]
ATGGAACAACCCCTGAAAGTGATGGTGATCGACGATTCACGCACCATTCGCCGCACGGCGCAGATGCTGCTCAGTGAGGT
GGGCTGCGAGGTCATCACTGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGATCACAACCCGGCCGTGATCTTCG
TCGATGTCTTGATGCCGCGCCTGGACGGCTACCAGACGTGCGCGGTGATCAAGCAGAACAGCACCTTCAAGGACGTCCCG
GTGATTCTGTTGTCGTCGCGCGACGGTTTGTTCGACAAGGCCCGCGGGCGTGTGGTCGGTTCTGATCAGTTTCTGACCAA
GCCGTTTACCAAGGAAGAACTGATCGAGGCAATACAGGCCCATGTGCCTGGGTTTGCCACAGCCCAACAAACAGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.5

90.226

0.609

Multiple sequence alignment