Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB0764_RS17870 Genome accession   NZ_CP162497
Coordinates   3391235..3391675 (+) Length   146 a.a.
NCBI ID   WP_014458694.1    Uniprot ID   A0A8D3WZE0
Organism   Priestia megaterium strain 10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3386235..3396675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0764_RS17850 (AB0764_17845) - 3386640..3387311 (-) 672 WP_014458698.1 response regulator transcription factor -
  AB0764_RS17855 (AB0764_17850) - 3387637..3388455 (+) 819 WP_014458697.1 squalene/phytoene synthase family protein -
  AB0764_RS17860 (AB0764_17855) - 3388491..3390440 (-) 1950 WP_208732972.1 FUSC family protein -
  AB0764_RS17865 (AB0764_17860) - 3390597..3390857 (-) 261 WP_406866980.1 metal-sensitive transcriptional regulator -
  AB0764_RS17870 (AB0764_17865) nucA/comI 3391235..3391675 (+) 441 WP_014458694.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0764_RS17875 (AB0764_17870) comJ 3391711..3392118 (+) 408 WP_014458693.1 competence protein ComJ -
  AB0764_RS17880 (AB0764_17875) - 3392229..3392354 (+) 126 WP_264195596.1 hypothetical protein -
  AB0764_RS17885 (AB0764_17880) - 3392351..3392941 (-) 591 WP_014458692.1 CPBP family intramembrane glutamic endopeptidase -
  AB0764_RS17890 (AB0764_17885) helD 3393330..3395648 (-) 2319 WP_406866498.1 RNA polymerase recycling motor HelD -
  AB0764_RS17895 (AB0764_17890) - 3395892..3396017 (-) 126 WP_014458690.1 hypothetical protein -
  AB0764_RS17900 (AB0764_17895) - 3396158..3396673 (-) 516 WP_115654720.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16004.83 Da        Isoelectric Point: 4.4411

>NTDB_id=1026576 AB0764_RS17870 WP_014458694.1 3391235..3391675(+) (nucA/comI) [Priestia megaterium strain 10]
MSTYGKKLMASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1026576 AB0764_RS17870 WP_014458694.1 3391235..3391675(+) (nucA/comI) [Priestia megaterium strain 10]
ATGAGTACATACGGGAAAAAATTAATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGC
GTTTTTAGCTCCTGAAAAAACGGAAGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAA
CCGGCGATCATATTCGCGACGCAATTGCTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAAC
CGAGAAGAATCGCTAAAAGGATACCCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCAGGAGCTGATATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAAC
AGTACCCAGATGGTACACGCGTACAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

86.301

0.562

Multiple sequence alignment