Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ECTO6_RS23460 Genome accession   NZ_LS992166
Coordinates   4794904..4795896 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli isolate Escherichia coli str. TO6     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4789904..4800896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTO6_RS23450 (ECTO6_04759) yieP 4792796..4793488 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ECTO6_RS23455 (ECTO6_04760) mdtD 4793511..4794938 (+) 1428 WP_134092025.1 multidrug transporter subunit MdtD -
  ECTO6_RS23460 (ECTO6_04761) cytR 4794904..4795896 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ECTO6_RS23465 (ECTO6_04762) rbsK 4795900..4796829 (-) 930 WP_001300603.1 ribokinase -
  ECTO6_RS23470 (ECTO6_04763) rbsB 4796955..4797845 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ECTO6_RS23475 (ECTO6_04764) rbsC 4797870..4798835 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ECTO6_RS23480 (ECTO6_04765) rbsA 4798840..4800345 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ECTO6_RS23485 (ECTO6_04766) rbsD 4800353..4800772 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=1026565 ECTO6_RS23460 WP_000224470.1 4794904..4795896(-) (cytR) [Escherichia coli isolate Escherichia coli str. TO6]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1026565 ECTO6_RS23460 WP_000224470.1 4794904..4795896(-) (cytR) [Escherichia coli isolate Escherichia coli str. TO6]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment