Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB4J90_RS13295 Genome accession   NZ_CP162496
Coordinates   2608805..2610526 (-) Length   573 a.a.
NCBI ID   WP_368492782.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain BIM B-1973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2603805..2615526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4J90_RS13265 (AB4J90_13265) - 2604273..2604521 (+) 249 WP_327054520.1 DUF2627 domain-containing protein -
  AB4J90_RS13270 (AB4J90_13270) - 2604525..2605259 (-) 735 WP_011887777.1 glycerophosphodiester phosphodiesterase -
  AB4J90_RS13275 (AB4J90_13275) - 2605368..2605520 (+) 153 WP_081432649.1 YycC family protein -
  AB4J90_RS13280 (AB4J90_13280) - 2605661..2606080 (+) 420 WP_099233365.1 hypothetical protein -
  AB4J90_RS13285 (AB4J90_13285) spo0A 2606212..2607045 (-) 834 WP_087960146.1 sporulation transcription factor Spo0A -
  AB4J90_RS13290 (AB4J90_13290) spoIVB 2607283..2608578 (-) 1296 WP_011887780.1 SpoIVB peptidase -
  AB4J90_RS13295 (AB4J90_13295) recN 2608805..2610526 (-) 1722 WP_368492782.1 DNA repair protein RecN Machinery gene
  AB4J90_RS13300 (AB4J90_13300) argR 2610669..2611118 (-) 450 WP_008879800.1 transcriptional regulator ArgR -
  AB4J90_RS13305 (AB4J90_13305) - 2611202..2612047 (-) 846 WP_029761060.1 TlyA family RNA methyltransferase -
  AB4J90_RS13310 (AB4J90_13310) dxs 2612053..2613945 (-) 1893 WP_011887782.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB4J90_RS13315 (AB4J90_13315) - 2614210..2615103 (-) 894 WP_008879803.1 polyprenyl synthetase family protein -
  AB4J90_RS13320 (AB4J90_13320) - 2615107..2615337 (-) 231 WP_008879804.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63985.30 Da        Isoelectric Point: 4.7872

>NTDB_id=1026527 AB4J90_RS13295 WP_368492782.1 2608805..2610526(-) (recN) [Geobacillus thermodenitrificans strain BIM B-1973]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQK
CAEVGIDVSEGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEAL
ARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQASLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSG
EGRGLDSIGEAMGHLDDVAAMDAALKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=1026527 AB4J90_RS13295 WP_368492782.1 2608805..2610526(-) (recN) [Geobacillus thermodenitrificans strain BIM B-1973]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATCATTGAATCGCTATCTTTGTCCTTTGACAAAGGACTGACAGTGTT
AACCGGCGAAACAGGGGCTGGTAAATCGATCATCATTGATGCGATTCATCTATTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCAGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCACCCATGTTGCCAAAAG
TGCGCTGAGGTCGGCATCGATGTGAGCGAAGGAATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACGACCGCCATATTGCGGGAAGTTGGAGCGACGCTTGTCGATATTCACGGTCAGCATG
AGCATCAAGAGCTGATGGATCCGTCGCGTCATTTACCGCTTCTTGATGAATTCGGCGGTGCGGAGATGGCGGAGGCGCTC
GCACGCTACCGCGCTGTCTATGAACAGCATGAAGCGTTGGTGAAAAAATTAAAAAAACTGAGTGAAAATGAACAGCAAAT
GGCGCATCGGCTTGATTTATTGACATTTCAGCTGCGCGAAATCGAACAGGCCTCACTCGAGCTCGGAGAAGACGAACGGC
TGATGGAAGAAAAAGTGCGCATTGTCAACTTTCAAAAGATATACAGTGCCATCCAAAAAAGCTATGAAGCGCTCTCCGGT
GAAGGACGCGGCCTTGATTCGATCGGGGAAGCGATGGGCCACCTCGATGATGTCGCCGCGATGGATGCTGCGCTGAAGGA
GGCGTACGAAACAGTTGCCAACAGCTACTACTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAGCTTG
AGTATGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCTGAAATCCAGCAGTTAAAACGAAAATACGGCGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGTGAGACCCATGTGCATGA
ACTTGAGCGACAGCTTGCAGCAGTGACAAGCGATTTGCTGATGGAGGCGGAAAACGTGACCAACGTTCGCCGCACTTACG
CCCGGGAGCTGATTGAACGCATTCACCAAGAGTTAAAAGATTTGTACATGGAGAAGACGCAGTTTGACATCATCTTTGCG
AAACGTGAAGGACCACTCGATGCTCCATTGGTTGATGGCGTGCCGGTTAAGTTTCACGAAGATGGCATCGACGTCGTTGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTGAAACCGCTCGCTAAAGTTGCTTCGGGCGGTGAATTGTCACGGATTA
TGTTAGCGTTGAAAACGATTTTTTCCAAACATCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACAGGCGTCAGC
GGTCGTGTCGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCACCTGCC
GCAAGTGGCTGCCATGGCGGACACGCATTTATTCATCGCCAAAGAAACGGACGGAACGCGTACGAAAACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTAAAAGAAATCGGGCGAATGATTTCCGGCGTCGAAATGACGGAGTTGACAAAACAGCAT
GCCAAAGAACTGTTAGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.628

Multiple sequence alignment