Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB4J90_RS07770 Genome accession   NZ_CP162496
Coordinates   1532182..1533129 (+) Length   315 a.a.
NCBI ID   WP_100660370.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain BIM B-1973     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527182..1538129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4J90_RS07760 (AB4J90_07760) cysI 1528199..1529920 (+) 1722 WP_008879451.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  AB4J90_RS07765 (AB4J90_07765) gucD 1530179..1531642 (+) 1464 WP_008879450.1 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  AB4J90_RS07770 (AB4J90_07770) ceuB 1532182..1533129 (+) 948 WP_100660370.1 ABC transporter permease Machinery gene
  AB4J90_RS07775 (AB4J90_07775) - 1533122..1534072 (+) 951 WP_008879448.1 iron chelate uptake ABC transporter family permease subunit -
  AB4J90_RS07780 (AB4J90_07780) - 1534066..1534821 (+) 756 WP_008879447.1 ABC transporter ATP-binding protein -
  AB4J90_RS07785 (AB4J90_07785) - 1535077..1536036 (+) 960 WP_008879446.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34716.61 Da        Isoelectric Point: 9.4613

>NTDB_id=1026522 AB4J90_RS07770 WP_100660370.1 1532182..1533129(+) (ceuB) [Geobacillus thermodenitrificans strain BIM B-1973]
MKKWMLLLFGLSLLSLFVGVHDLSPRALWEGDRDAWEIFLISRLPRLVSIIIAGASVSICGLIMQQLSQNKFVSPTTAGT
MDWARLGLLVSMILFASASPIVKAAIAVLFAFTGTLLFMTVLDRVKYKDSVFIPLVGLMFGNIIGSVTTFLAYKYDLIQS
VSAWLQGDFSVMMQGRYEMLYISVPLMAIAYAYANRFTIAGMGEEMATNLGLRYRSIVYTGLIIVAVTSSIEVLTVGSLP
FLGLIVPNIVTMYYGDHLRKVLPVTALAGALFVLVCDLFGRIVIYPYEIPIGLTVGVIGSGVFLYLLIRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1026522 AB4J90_RS07770 WP_100660370.1 1532182..1533129(+) (ceuB) [Geobacillus thermodenitrificans strain BIM B-1973]
ATGAAAAAATGGATGTTGTTGCTTTTTGGATTATCGCTTCTTTCCTTATTTGTCGGGGTGCATGATTTATCCCCCCGTGC
GCTATGGGAGGGAGACCGTGATGCGTGGGAAATTTTCTTGATCAGCCGGTTGCCGCGGCTCGTCAGCATCATCATCGCTG
GGGCGAGCGTCAGCATTTGCGGCTTGATTATGCAACAGCTTAGTCAAAACAAATTCGTGTCGCCGACAACGGCGGGAACG
ATGGACTGGGCGCGGCTCGGGCTATTAGTGTCAATGATTTTGTTTGCCTCGGCCTCGCCGATCGTAAAGGCCGCCATTGC
TGTGTTGTTTGCGTTCACCGGAACATTGTTGTTTATGACGGTATTGGACCGTGTCAAGTATAAAGATTCGGTGTTCATTC
CGCTCGTCGGTCTCATGTTTGGTAATATCATCGGCTCGGTGACGACGTTTTTAGCGTATAAATATGATTTGATCCAATCG
GTTTCCGCTTGGCTGCAAGGCGATTTTTCGGTCATGATGCAAGGACGCTATGAGATGTTATACATTAGCGTCCCACTTAT
GGCGATCGCTTACGCGTACGCCAACCGATTTACCATCGCGGGCATGGGAGAAGAGATGGCCACGAATTTAGGGCTTCGTT
ACCGGTCGATTGTGTATACAGGACTGATCATTGTCGCGGTCACTTCATCGATTGAAGTGTTGACAGTCGGCTCCTTGCCG
TTTTTAGGGTTGATCGTTCCGAATATTGTGACGATGTATTACGGTGATCATTTACGCAAAGTGCTGCCGGTCACTGCGCT
TGCCGGGGCTTTGTTCGTGCTTGTTTGCGATCTGTTTGGTCGGATCGTCATTTATCCATACGAGATTCCGATCGGCTTAA
CGGTCGGGGTGATCGGGAGCGGCGTCTTTTTATATTTGCTTATAAGGAGAACGAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.29

98.413

0.505

Multiple sequence alignment