Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB4J90_RS04645 Genome accession   NZ_CP162496
Coordinates   917437..919260 (+) Length   607 a.a.
NCBI ID   WP_368493034.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain BIM B-1973     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 912437..924260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4J90_RS04625 (AB4J90_04625) - 912800..913468 (-) 669 WP_008878969.1 TerC family protein -
  AB4J90_RS04630 (AB4J90_04630) mecA 913685..914365 (+) 681 WP_008878968.1 adaptor protein MecA -
  AB4J90_RS04635 (AB4J90_04635) cls 914462..915970 (+) 1509 WP_008878967.1 cardiolipin synthase -
  AB4J90_RS04640 (AB4J90_04640) - 916118..917404 (+) 1287 WP_035498520.1 competence protein CoiA -
  AB4J90_RS04645 (AB4J90_04645) pepF 917437..919260 (+) 1824 WP_368493034.1 oligoendopeptidase F Regulator
  AB4J90_RS04650 (AB4J90_04650) - 919274..919471 (-) 198 WP_011886943.1 hypothetical protein -
  AB4J90_RS04655 (AB4J90_04655) spxH 919743..920636 (-) 894 WP_029761532.1 ClpXP adapter protein SpxH -
  AB4J90_RS04660 (AB4J90_04660) - 920629..921042 (-) 414 WP_008878963.1 globin -
  AB4J90_RS04665 (AB4J90_04665) - 921144..921752 (-) 609 WP_029761533.1 lytic transglycosylase domain-containing protein -
  AB4J90_RS04670 (AB4J90_04670) - 921752..922339 (-) 588 WP_008878961.1 CYTH domain-containing protein -
  AB4J90_RS04675 (AB4J90_04675) - 922474..922851 (+) 378 WP_008878960.1 hypothetical protein -
  AB4J90_RS04680 (AB4J90_04680) - 922979..923617 (+) 639 WP_029761535.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70311.22 Da        Isoelectric Point: 4.9488

>NTDB_id=1026516 AB4J90_RS04645 WP_368493034.1 917437..919260(+) (pepF) [Geobacillus thermodenitrificans strain BIM B-1973]
MMVEENKAKKSLPSRSEIPVEETWRLEDIFPTDDAWEQEFQQVKAMIPKISEYKGRLGESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDDRAKGLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYEHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYKSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKSVLGLDELHMYDLYTPLVQDV
KMEVTYDEAKQYMLDGLAPLGEEYVSIVKEGLENRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAQTLTSLYYDLNKKYFGDDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIE
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1026516 AB4J90_RS04645 WP_368493034.1 917437..919260(+) (pepF) [Geobacillus thermodenitrificans strain BIM B-1973]
ATGATGGTGGAAGAGAATAAGGCAAAGAAATCGCTCCCGTCCCGGAGCGAAATCCCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCAACCGATGATGCGTGGGAACAGGAGTTTCAGCAAGTAAAGGCGATGATTCCAAAAATCAGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGATGTATGAAGCGCTGCAATACCAAGATGAAGTATCGATGCGTCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGACACGACGAACTCGTTTTACCAAGGGCTCGACGACAGGGCGAAAGG
GTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCCATCGATGAAGCGGTGCTGCGTTCGT
TTTTAGAGCAATACGAACCGCTTCGGCTGTATGAGCACGCGTTAGACGAAATCACGCGCCAGCGCCCGCACGTCTTGTCC
GCTGAAGAAGAAGCGCTGTTGGCACAGGCTGCTGAGGTGATGCAGGCGACATCGTCGACGTTCAGTGCGTTAAACAACGC
TGACTTAACGTTCCCGACGATTCGCGACGAAAATGGGGATGAAGTGGAAGTGACGCACGGCCGGTTTATCCGATTTTTAG
AAAGTACCGACCGCCGCGTTCGTCGCGATGCGTTTCATGCAGTATACCATACGTACGAGAAGTTCCAGAACACGTTTGCC
AACACACTTGCGGGCACGGTGAAAAAAGACAACTTTTTTGCTCGCGTCCGTCGCTACAAATCAGCACGAGAAGCGGCGTT
AGATGCGAACAATATACCGGAAAGCGTCTATGATAATTTAATTGCCACAATTCATGAGCATTTACCGCTTTTGCACCGGT
ATGTGCGGCTGCGCAAAAGCGTACTAGGGCTTGACGAGCTGCATATGTATGACTTATATACTCCGCTCGTGCAAGATGTG
AAAATGGAAGTGACATACGACGAAGCGAAGCAATATATGCTTGACGGGTTGGCGCCGCTTGGCGAGGAATATGTGTCGAT
CGTCAAAGAAGGGCTTGAGAACCGATGGGTCGATGTGCGCGAAAATAAAGGAAAGCGAAGTGGAGCCTATTCGTCAGGAG
CGTATGGCACCCACCCGTATATTTTGCTGAACTGGCAAGATAATGTGAACAACTTGTTTACGCTCGTACATGAGTTCGGC
CACTCAGTCCATAGTTACTATACGCGCAAAACGCAGCCGTATCCGTATGCTCATTATTCGATTTTTGTCGCTGAAGTGGC
GTCGACATGCAATGAGGCATTGCTGAACGATTATTTGTTGAAAACGATCGATGATGAGAAAAAACGGCTATACTTGCTGA
ACCATTATCTTGAAGGATTCCGCGGTACCGTCTTTCGACAAACGATGTTTGCCGAATTCGAGCATTTGATCCATCTGAAG
GCGCAGGAGGGAGAGGCGCTGACAGCACAGACGCTCACATCGCTCTATTATGACCTGAACAAAAAATATTTCGGCGATGA
TATGGTGGTTGATGAGGAAATTGGTCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTATATCAATACG
CGACCGGCTTCAGCGCGGCAACGGCGCTTAGCAAGCAGATTTTAGAGGAAGGCGAGCCGGCGGTGAAACGGTACATCGAG
TTTTTAAAAGCCGGAAGCTCTGATTATCCGATTGAGGTGCTGAAAAAAGCTGGCGTCGATATGACGAGCGCTGAACCGAT
TCGTCAAGCGTGTCAAGTGTTTGCAGAGAAGTTGGAAGAAATGGAGCGCTTGCTTGGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.01

97.858

0.499

Multiple sequence alignment