Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECTO6_RS00460 Genome accession   NZ_LS992166
Coordinates   90373..91041 (+) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli isolate Escherichia coli str. TO6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 85373..96041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTO6_RS00430 (ECTO6_00091) yicC 85392..86255 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  ECTO6_RS00435 (ECTO6_00092) rph 86382..87098 (+) 717 WP_001247097.1 ribonuclease PH -
  ECTO6_RS00440 (ECTO6_00093) pyrE 87164..87805 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ECTO6_RS00445 (ECTO6_00094) slmA 87842..88438 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  ECTO6_RS00450 (ECTO6_00095) dut 88545..89003 (-) 459 WP_000976073.1 dUTP diphosphatase -
  ECTO6_RS00455 (ECTO6_00096) coaBC 88981..90201 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECTO6_RS00460 (ECTO6_00097) radC 90373..91041 (+) 669 WP_001350561.1 DNA repair protein RadC Machinery gene
  ECTO6_RS00465 (ECTO6_00098) rpmB 91258..91494 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECTO6_RS00470 (ECTO6_00099) rpmG 91515..91682 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECTO6_RS00475 (ECTO6_00100) mutM 91780..92589 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECTO6_RS00480 (ECTO6_00101) coaD 92628..93107 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  ECTO6_RS00485 (ECTO6_00102) waaA 93115..94392 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECTO6_RS00490 (ECTO6_00104) rfaQ 94798..95868 (+) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=1026486 ECTO6_RS00460 WP_001350561.1 90373..91041(+) (radC) [Escherichia coli isolate Escherichia coli str. TO6]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1026486 ECTO6_RS00460 WP_001350561.1 90373..91041(+) (radC) [Escherichia coli isolate Escherichia coli str. TO6]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496