Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STN4L_RS07065 Genome accession   NZ_LS974444
Coordinates   1350432..1351205 (-) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus strain N4L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345432..1356205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS07050 (STN4L_01652) purC 1347975..1348682 (-) 708 WP_011680589.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  STN4L_RS07055 (STN4L_01653) - 1348967..1349212 (-) 246 WP_002949008.1 phosphopantetheine-binding protein -
  STN4L_RS07060 (STN4L_01654) plsX 1349212..1350216 (-) 1005 WP_014727281.1 phosphate acyltransferase PlsX -
  STN4L_RS07065 (STN4L_01655) recO 1350432..1351205 (-) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  STN4L_RS07070 (STN4L_01656) - 1351192..1352367 (-) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  STN4L_RS07075 - 1352580..1353425 (+) 846 Protein_1331 transposase -
  STN4L_RS07080 (STN4L_01657) - 1353474..1354439 (-) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  STN4L_RS07085 (STN4L_01658) - 1354653..1356077 (-) 1425 WP_046206377.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=1026445 STN4L_RS07065 WP_002946256.1 1350432..1351205(-) (recO) [Streptococcus thermophilus strain N4L]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1026445 STN4L_RS07065 WP_002946256.1 1350432..1351205(-) (recO) [Streptococcus thermophilus strain N4L]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment