Detailed information NTG0102633

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AS97_RS24590
• Genome accession: NZ_CP007153
• Coordinates: 5706726..5709317 (+)
• Length: 863 a.a.
• NCBI ID: WP_059146502.1
• Uniprot ID: A0ABN1C4V8
• Organism: Streptomyces sp. AgN23
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5701726..5714317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AS97_RS24565 (AS97_00890)	dnaJ	5702227..5703417 (+)	1191	WP_059146498.1	molecular chaperone DnaJ	-
AS97_RS24570 (AS97_00895)	-	5703423..5703902 (+)	480	WP_059146499.1	helix-turn-helix domain-containing protein	-
AS97_RS24575 (AS97_00900)	-	5704087..5704458 (+)	372	WP_059146500.1	cupin domain-containing protein	-
AS97_RS24580 (AS97_00905)	proP	5704588..5706123 (+)	1536	WP_201724641.1	glycine betaine/L-proline transporter ProP	-
AS97_RS24585 (AS97_00910)	-	5706185..5706589 (-)	405	WP_059146501.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
AS97_RS24590 (AS97_00915)	clpC	5706726..5709317 (+)	2592	WP_059146502.1	ATP-dependent chaperone ClpB	Regulator
AS97_RS24595 (AS97_00920)	-	5709473..5710015 (+)	543	WP_059146503.1	YbjN domain-containing protein	-
AS97_RS24600 (AS97_50985)	-	5710057..5711244 (-)	1188	WP_201724640.1	hypothetical protein	-
AS97_RS24605 (AS97_50990)	-	5711416..5711850 (-)	435	Protein_4927	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
AS97_RS24610 (AS97_50995)	-	5712077..5713207 (+)	1131	WP_247204826.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
AS97_RS24615 (AS97_51000)	cutA	5713240..5713572 (+)	333	WP_078642603.1	divalent-cation tolerance protein CutA	-

Sequence

Protein

• Length: 863 a.a.
• Molecular weight: 94224.89 Da
• Isoelectric Point: 4.7037

>NTDB_id=102633 AS97_RS24590 WP_059146502.1 5706726..5709317(+) (clpC) [Streptomyces sp. AgN23]
MDAELTNKSRAALSAANDRAVSSGHADMTPAHLLLALLEGQDNENVMDLLAAVEADAALVRSGAERLLAALPSVQGSTVA
PPQASRDLLAVIADATQRARELGDDYVSTEHVLIGIAAKGGQAGELLDQQGASAKKLLAAFEKVRGGQRVTTPDPEGTYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGDPGVGKTAVVEGLAQRIVKGDVPESLRDKRLVA
LDLGAMVAGAKYRGEFEERLKTVLAEIKSSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDAALERRFQQVLVAEPTVEDTVAILRGLKGRYEAHHKVQIADGALVAAAALSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRSVDRMRMEEMALARETDEASKLRLDKLRRDLADKEEELRGLTARWEKEKQGLNRVGELKER
LDELRGQAERAQRDGDFDTASKLLYGEIPAVERELAEASEAEAEVQQDRPTMVKEEVGPDDVADVVASWTGIPAGRLLEG
ETKKLLRMEEELGKRLIGQMEAVRAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDM
SEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFRNTIL
VLTSNLGSQYLMDPLLGEEEKKQSVLETVRASFKPEFLNRLDDLVVFSALSGPELARIAELQIARLARRLADRRLTLDVT
PAALEWLAEEGNDPAYGARPLRRLIQTAIGDQLAKEILAGEIRDGDKVRVDRVGDELLVGPAQ

Nucleotide

• Length: 2592 bp

>NTDB_id=102633 AS97_RS24590 WP_059146502.1 5706726..5709317(+) (clpC) [Streptomyces sp. AgN23]
GTGGATGCCGAGCTGACCAACAAGAGCCGGGCGGCGCTGAGCGCCGCCAATGACCGGGCGGTGTCCTCCGGACACGCGGA
TATGACGCCCGCGCATCTCCTGCTCGCCCTGCTGGAGGGCCAGGACAACGAGAACGTCATGGATCTGCTGGCAGCCGTCG
AGGCCGACGCGGCCCTCGTGCGCAGCGGCGCCGAGCGGCTGCTCGCCGCCCTGCCCAGCGTCCAGGGCTCCACCGTGGCC
CCGCCGCAGGCCAGCCGCGATCTGCTCGCCGTCATCGCGGACGCCACCCAGCGGGCCAGGGAACTGGGGGACGACTATGT
CTCCACCGAGCATGTGCTCATCGGCATCGCCGCCAAGGGCGGCCAGGCCGGGGAGCTGCTCGACCAGCAGGGGGCGAGCG
CCAAGAAGCTGCTCGCCGCGTTCGAGAAGGTCAGGGGTGGACAGCGGGTGACGACGCCCGATCCGGAGGGCACGTACAAG
GCCCTGGAGAAGTTCGGCACGGACTTCACCGCCGCCGCGCGCGAGGGCAAGCTGGACCCGGTCATCGGCCGGGACCAGGA
GATCCGCCGGGTGGTGCAGGTGCTCTCCCGGCGCACCAAGAACAACCCGGTGCTGATCGGCGATCCGGGCGTCGGTAAGA
CGGCCGTCGTCGAGGGGCTCGCCCAGCGGATCGTCAAGGGCGACGTCCCCGAGAGCCTGCGCGACAAGCGCCTGGTCGCC
CTCGACCTCGGCGCGATGGTCGCGGGCGCGAAGTACCGCGGTGAGTTCGAGGAGCGGCTGAAGACCGTCCTGGCCGAGAT
CAAGTCCAGCGACGGCCAGATCATCACCTTCATCGACGAGCTGCACACCGTGGTCGGCGCGGGCGCCGGCGGCGACTCCG
CGATGGACGCGGGCAATATGCTCAAGCCGATGCTGGCCCGTGGTGAGCTGCGCATGGTCGGCGCCACCACCCTCGACGAG
TACCGTGAGCGGATCGAGAAGGATGCCGCGCTCGAGCGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGACCGTCGAGGA
CACCGTCGCCATCCTGCGCGGGCTCAAGGGCCGCTACGAGGCCCATCACAAGGTGCAGATCGCCGACGGCGCGCTGGTGG
CCGCCGCGGCCCTCTCCGACCGGTACATCACCTCCCGCTTCCTGCCCGACAAGGCCATCGACCTGGTCGACGAGGCGGCC
TCCCGGCTCCGGATGGAGATCGACTCCTCCCCCGTGGAGATCGACGAGCTCCAGCGGTCGGTGGACCGGATGCGGATGGA
GGAGATGGCGCTGGCCCGGGAGACCGACGAGGCCAGCAAGCTGCGGCTGGACAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGGCTCACCGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGCGTCGGTGAGCTCAAGGAGCGG
CTGGACGAGCTGCGCGGCCAGGCCGAGCGCGCCCAGCGCGACGGCGACTTCGACACCGCCTCCAAGCTGCTGTACGGGGA
AATTCCGGCCGTGGAGCGGGAGCTGGCCGAGGCGTCGGAGGCCGAGGCCGAGGTGCAGCAGGACCGTCCCACCATGGTCA
AGGAGGAGGTGGGCCCGGACGACGTGGCCGATGTGGTCGCCTCCTGGACCGGCATCCCCGCCGGCCGGCTGCTGGAGGGC
GAGACCAAGAAGCTGCTGCGCATGGAGGAGGAGCTGGGCAAGCGGCTGATCGGCCAGATGGAAGCCGTAAGGGCGGTATC
GGACGCCGTGCGCAGGACTCGCGCGGGCATCGCCGACCCGGACCGGCCCACCGGTTCGTTCCTCTTCCTCGGCCCCACCG
GCGTCGGCAAGACCGAGCTGGCCAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATG
AGCGAGTACGGCGAGAAGCACAGCGTGGCCCGGCTGGTCGGCGCCCCGCCCGGGTACGTCGGCTACGAGGAGGGCGGCCA
GCTGACCGAGGCGGTGCGCCGCCGCCCGTACAGCGTGGTGCTGCTGGACGAGGTGGAGAAGGCCCACCCCGAGGTCTTCG
ACGTTCTGCTCCAGGTCCTCGACGACGGGCGGCTCACCGACGGCCAGGGCCGGACGGTGGACTTCCGCAACACCATTCTG
GTGCTCACCTCCAACCTGGGCAGCCAGTACCTGATGGATCCGCTGCTCGGCGAGGAGGAGAAGAAGCAGAGCGTCCTGGA
GACCGTACGGGCCTCCTTCAAGCCGGAATTCCTCAACCGCCTGGACGACCTCGTGGTCTTCTCCGCGCTCAGCGGGCCGG
AGCTGGCCCGGATCGCCGAACTCCAGATCGCCCGGCTGGCCCGCCGCCTCGCCGACCGCAGGCTGACCCTCGACGTCACC
CCGGCCGCGCTGGAATGGCTGGCCGAGGAGGGCAACGACCCGGCCTACGGGGCGCGCCCGCTGCGTCGGCTGATCCAGAC
CGCGATCGGCGACCAGCTGGCCAAGGAGATCCTCGCCGGGGAGATCCGCGACGGCGACAAGGTCCGGGTGGACCGGGTCG
GCGACGAGCTTCTGGTGGGCCCCGCGCAATAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• AAA lid domain (AAA_lid_9) (344-446)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (770-850)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-763)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.543	100	0.441
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.551	100	0.416
clpC	Lactococcus lactis subsp. cremoris KW2	45.389	80.417	0.365
clpE	Streptococcus mutans UA159	45.297	80.07	0.363