Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AB3440_RS06080 Genome accession   NZ_CP162471
Coordinates   1253922..1254638 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain TUM20819     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248922..1259638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3440_RS06060 (AB3440_06060) - 1250014..1250964 (+) 951 WP_000790329.1 LacI family DNA-binding transcriptional regulator -
  AB3440_RS06065 (AB3440_06065) - 1251113..1252597 (+) 1485 WP_000141427.1 sucrose-6-phosphate hydrolase -
  AB3440_RS06070 (AB3440_06070) - 1252594..1253553 (+) 960 WP_117201054.1 carbohydrate kinase -
  AB3440_RS06075 (AB3440_06075) - 1253741..1253850 (-) 110 Protein_1177 hypothetical protein -
  AB3440_RS06080 (AB3440_06080) agrA 1253922..1254638 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  AB3440_RS06085 (AB3440_06085) agrC 1254657..1255949 (-) 1293 WP_172576662.1 quorum-sensing sensor histidine kinase AgrC -
  AB3440_RS06090 (AB3440_06090) agrD 1255974..1256114 (-) 141 WP_000735197.1 cyclic lactone autoinducer peptide AgrD -
  AB3440_RS06095 (AB3440_06095) - 1256118..1256681 (-) 564 WP_001105705.1 accessory gene regulator AgrB -
  AB3440_RS06100 (AB3440_06100) - 1256917..1257051 (+) 135 WP_001823225.1 delta-lysin family phenol-soluble modulin -
  AB3440_RS06105 (AB3440_06105) - 1257650..1258435 (-) 786 WP_000867941.1 carbon-nitrogen family hydrolase -
  AB3440_RS06110 (AB3440_06110) - 1258796..1259422 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=1026244 AB3440_RS06080 WP_000688492.1 1253922..1254638(-) (agrA) [Staphylococcus aureus strain TUM20819]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1026244 AB3440_RS06080 WP_000688492.1 1253922..1254638(-) (agrA) [Staphylococcus aureus strain TUM20819]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment