Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AB3429_RS13705 Genome accession   NZ_CP162465
Coordinates   2754872..2755318 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20825     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2749872..2760318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3429_RS13675 (AB3429_13675) gcvPA 2750798..2752144 (-) 1347 WP_117200971.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AB3429_RS13680 (AB3429_13680) gcvT 2752164..2753255 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  AB3429_RS13685 (AB3429_13685) - 2753414..2753938 (-) 525 WP_001015121.1 shikimate kinase -
  AB3429_RS13690 (AB3429_13690) - 2753928..2754074 (-) 147 WP_001789879.1 hypothetical protein -
  AB3429_RS13695 (AB3429_13695) comGF 2754171..2754668 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB3429_RS13700 (AB3429_13700) comGE 2754586..2754885 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AB3429_RS13705 (AB3429_13705) comGD 2754872..2755318 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB3429_RS13710 (AB3429_13710) comGC 2755296..2755607 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3429_RS13715 (AB3429_13715) comGB 2755621..2756691 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB3429_RS13720 (AB3429_13720) comGA 2756663..2757637 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  AB3429_RS13725 (AB3429_13725) - 2757689..2758312 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  AB3429_RS13730 (AB3429_13730) - 2758309..2758638 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AB3429_RS13735 (AB3429_13735) - 2758638..2759624 (-) 987 WP_000161314.1 ROK family glucokinase -
  AB3429_RS13740 (AB3429_13740) - 2759621..2759824 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=1026137 AB3429_RS13705 WP_001788899.1 2754872..2755318(-) (comGD) [Staphylococcus aureus strain TUM20825]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1026137 AB3429_RS13705 WP_001788899.1 2754872..2755318(-) (comGD) [Staphylococcus aureus strain TUM20825]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment