Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQL17_RS02990 Genome accession   NZ_LS483496
Coordinates   591912..592514 (+) Length   200 a.a.
NCBI ID   WP_005641249.1    Uniprot ID   A0ABX3BRK5
Organism   Haemophilus influenzae strain NCTC8455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586912..597514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS02975 (NCTC8455_00588) - 587775..590375 (+) 2601 WP_050948872.1 penicillin-binding protein 1A -
  DQL17_RS02980 (NCTC8455_00589) - 590452..591297 (+) 846 WP_005652116.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DQL17_RS02985 (NCTC8455_00590) - 591450..591779 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DQL17_RS02990 (NCTC8455_00591) recR 591912..592514 (+) 603 WP_005641249.1 recombination mediator RecR Machinery gene
  DQL17_RS02995 (NCTC8455_00592) - 592530..594485 (+) 1956 WP_050948873.1 DNA topoisomerase III -
  DQL17_RS03000 (NCTC8455_00593) secG 594594..594935 (+) 342 WP_005691381.1 preprotein translocase subunit SecG -
  DQL17_RS09515 - 595199..595306 (+) 108 WP_374955603.1 integrase arm-type DNA-binding domain-containing protein -
  DQL17_RS09340 - 595364..595555 (+) 192 WP_230304891.1 phage integrase central domain-containing protein -
  DQL17_RS03015 (NCTC8455_00595) - 595770..595991 (-) 222 WP_006996233.1 sulfurtransferase TusA family protein -
  DQL17_RS03020 (NCTC8455_00596) - 595988..596506 (-) 519 WP_050948874.1 hemerythrin domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22079.17 Da        Isoelectric Point: 6.2854

>NTDB_id=1026038 DQL17_RS02990 WP_005641249.1 591912..592514(+) (recR) [Haemophilus influenzae strain NCTC8455]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLAQALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1026038 DQL17_RS02990 WP_005641249.1 591912..592514(+) (recR) [Haemophilus influenzae strain NCTC8455]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCAAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGCTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTATCACCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAAGGCGATGCGACGGCAAATTATATCGCTGAAATG
TGCCGCCAACACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTGGGTGGGGAACTAGAAACTGTAGACGGCAC
AACGCTTACCCACTCATTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43