Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK09_RS14110 Genome accession   NZ_AP027844
Coordinates   2905838..2906467 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017.18.02CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900838..2911467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK09_RS14095 (VEE62_27160) helD 2901080..2903134 (-) 2055 WP_001315388.1 DNA helicase IV -
  AABK09_RS14100 (VEE62_27170) yccF 2903257..2903703 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABK09_RS14105 (VEE62_27180) yccS 2903713..2905875 (+) 2163 WP_000875044.1 YccS family putative transporter -
  AABK09_RS14110 (VEE62_27190) sxy/tfoX 2905838..2906467 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK09_RS14115 (VEE62_27200) sulA 2906686..2907195 (+) 510 WP_029365099.1 SOS-induced cell division inhibitor SulA -
  AABK09_RS14120 (VEE62_27220) ompA 2907552..2908604 (+) 1053 WP_000750419.1 porin OmpA -
  AABK09_RS14125 (VEE62_27230) matP 2908679..2909131 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AABK09_RS14130 (VEE62_27240) ycbZ 2909317..2911077 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=102600 AABK09_RS14110 WP_000839153.1 2905838..2906467(-) (sxy/tfoX) [Escherichia coli strain 2017.18.02CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102600 AABK09_RS14110 WP_000839153.1 2905838..2906467(-) (sxy/tfoX) [Escherichia coli strain 2017.18.02CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment