Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DQL14_RS02330 Genome accession   NZ_LS483488
Coordinates   460520..461866 (+) Length   448 a.a.
NCBI ID   WP_162296846.1    Uniprot ID   -
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 455520..466866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL14_RS02300 (NCTC11637_00455) - 455651..456511 (+) 861 WP_108169702.1 beta-1,4-N-acetylgalactosamyltransferase -
  DQL14_RS02305 (NCTC11637_00456) - 456527..457078 (-) 552 WP_108169703.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  DQL14_RS02310 (NCTC11637_00457) - 457224..457685 (+) 462 WP_162296845.1 helix-turn-helix domain-containing protein -
  DQL14_RS02315 (NCTC11637_00458) - 457857..459020 (+) 1164 WP_033585129.1 NifS family cysteine desulfurase -
  DQL14_RS02320 (NCTC11637_00459) - 459042..460022 (+) 981 WP_001051992.1 iron-sulfur cluster assembly scaffold protein NifU -
  DQL14_RS02325 (NCTC11637_00460) - 460175..460408 (+) 234 WP_000415824.1 ribbon-helix-helix domain-containing protein -
  DQL14_RS02330 (NCTC11637_00461) radA/sms 460520..461866 (+) 1347 WP_162296846.1 DNA repair protein RadA Machinery gene
  DQL14_RS02335 (NCTC11637_00462) msrB 461990..463069 (+) 1080 WP_108169705.1 peptide-methionine (R)-S-oxide reductase MsrB -
  DQL14_RS02340 (NCTC11637_00463) - 463319..464152 (-) 834 WP_108169706.1 sulfite exporter TauE/SafE family protein -
  DQL14_RS02345 (NCTC11637_00464) hopM 464365..466524 (-) 2160 WP_231952896.1 Hop family outer membrane protein HopM/HopN -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49466.47 Da        Isoelectric Point: 8.2124

>NTDB_id=1025985 DQL14_RS02330 WP_162296846.1 460520..461866(+) (radA/sms) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNTLKNPIPKAQKSVSIAAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRAIRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGSP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1025985 DQL14_RS02330 WP_162296846.1 460520..461866(+) (radA/sms) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGCAAGTGCGTTCAATG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACACGCTTAAAAATCCGATCCCAAAAG
CGCAAAAAAGCGTTTCTATCGCCGCAATTGAACATGAAGAAGTGATTAAGTTTTCTTCCACTCAAAGCGAATTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGTCTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCATTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCGAAT
ATTGAGAGCGAAAATTATTTTGCGTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGAGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAAATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGCCCTAGAGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGTGCCA
TTACCATCACTTTAGAAGGCTCAAGAGCGTTGATTTTAGAAATCCAGGCGTTGGTGAGCGAGTGCAGTTTCGGATCACCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTTATTAATGTGAGCGGAGGTATTAAGATCAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCCAATTTGAACGCTAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACCTCTATCAAATGCTATGAAGCCAATGCGGTGGGTAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(66-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.838

95.313

0.446
  radA Streptococcus mitis SK321

46.714

95.089

0.444
  radA Streptococcus pneumoniae Rx1

46.714

95.089

0.444
  radA Streptococcus pneumoniae D39

46.714

95.089

0.444
  radA Streptococcus pneumoniae R6

46.714

95.089

0.444
  radA Streptococcus pneumoniae TIGR4

46.714

95.089

0.444
  radA Streptococcus mitis NCTC 12261

46.479

95.089

0.442

Multiple sequence alignment