Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DQL18_RS03820 Genome accession   NZ_LS483486
Coordinates   728129..730321 (+) Length   730 a.a.
NCBI ID   WP_005666647.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 723129..735321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS03795 (NCTC12194_00765) napA 723345..725828 (-) 2484 WP_111722521.1 nitrate reductase catalytic subunit NapA -
  DQL18_RS03800 (NCTC12194_00766) - 725864..726145 (-) 282 WP_005656333.1 chaperone NapD -
  DQL18_RS03805 (NCTC12194_00767) napF 726138..726669 (-) 532 Protein_720 ferredoxin-type protein NapF -
  DQL18_RS03810 (NCTC12194_00768) - 726875..727219 (-) 345 WP_105905464.1 YggL family protein -
  DQL18_RS03815 (NCTC12194_00769) trmB 727304..728044 (-) 741 WP_005666644.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL18_RS03820 (NCTC12194_00770) priA 728129..730321 (+) 2193 WP_005666647.1 primosomal protein N' Machinery gene
  DQL18_RS03825 (NCTC12194_00771) - 730363..731409 (-) 1047 WP_005649088.1 AI-2E family transporter -
  DQL18_RS03830 (NCTC12194_00772) glnB 731409..731747 (-) 339 WP_005649085.1 nitrogen regulatory protein P-II -
  DQL18_RS03835 (NCTC12194_00773) mog 731749..732342 (-) 594 WP_005635167.1 molybdopterin adenylyltransferase -
  DQL18_RS03840 (NCTC12194_00774) - 732425..732781 (-) 357 WP_005632174.1 diacylglycerol kinase -
  DQL18_RS03845 (NCTC12194_00775) relA 732796..735027 (-) 2232 WP_042593519.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82234.41 Da        Isoelectric Point: 9.0487

>NTDB_id=1025937 DQL18_RS03820 WP_005666647.1 728129..730321(+) (priA) [Haemophilus influenzae strain NCTC12194]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPTKSDVPEDKLKAILQPLDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALEQGELKRSKKQAEALQCLSETDLEKGNNNFSSA
IWSALKAKGFIEEITIQTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNIAVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALF
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSLVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=1025937 DQL18_RS03820 WP_005666647.1 728129..730321(+) (priA) [Haemophilus influenzae strain NCTC12194]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGCTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGCACTCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAACTCAAGGCTATTCTTCAACCATTGGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CACTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGACGCGGGGAAAAATGCCCTTGAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTACAATGCTTATCTGAAACTGATCTTGAAAAAGGCAATAATAATTTTTCCTCTGCC
ATTTGGTCTGCCTTAAAAGCCAAAGGGTTTATTGAAGAAATTACTATCCAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATAGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAGTATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTTAA
AGCACGTTTTAATGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCCATTGTGATTGGCACGAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAGGAACACGATTCGTCTTACAAACAACAAGACAGTTGGCGTTACCATGCGCGAGACTTGGCGATTGTGCTGGCTCA
AAAACTAAATATTGCGGTATTAATGGGCTCCGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTATTGATTTGAAAAATCAAAATATA
CAAAACGGGTTATCAAAACCCTTGTTGGAACGAATGAAAGCCCATCTCGAAAAAGGCAATCAAGTGTTGCTTTTCTTAAA
TCGTCGTGGCTTTGCACCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCACAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTAGGCACAGAACAATTAGAAGAAACCTTGAAAACGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACGGCACGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTCGCGAAAGGACATCATTTTCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACAAGGTGAAGTTGTGCTACAAACACATTATCCTGATCATCCTTTGCTTACCACTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGGTTGCCGCCTTTTACTTTTCAGGCGTTATTC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCGGGGCAATATCGCTGGCAGTTATTATTGCAAC
ATCCGTCAAGAATGACGTTGCAAAAAGCATTAAGAGAATATCAACAAGCCGAACTTGAAAAAAACAGCCTAGTGCGGTTA
ATTTTGGACGTCGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

Helicase conserved C-terminal domain (Helicase_C)

(503-589)

DEAD/DEAH box helicase (DEAD)

(204-366)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.489

100

0.453

Multiple sequence alignment