Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DQL22_RS09780 Genome accession   NZ_LS483485
Coordinates   2027979..2029352 (-) Length   457 a.a.
NCBI ID   WP_111300988.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022979..2034352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS09765 (NCTC11096_01960) lolA 2023842..2024459 (-) 618 WP_005703536.1 outer membrane lipoprotein chaperone LolA -
  DQL22_RS09770 (NCTC11096_01961) - 2024570..2027326 (-) 2757 WP_005703535.1 DNA translocase FtsK -
  DQL22_RS09775 (NCTC11096_01962) lrp 2027344..2027823 (-) 480 WP_005702602.1 leucine-responsive transcriptional regulator Lrp -
  DQL22_RS09780 (NCTC11096_01963) radA/sms 2027979..2029352 (-) 1374 WP_111300988.1 DNA repair protein RadA Machinery gene
  DQL22_RS09785 (NCTC11096_01964) - 2029363..2030433 (-) 1071 WP_111300990.1 inorganic triphosphatase -
  DQL22_RS09790 (NCTC11096_01965) - 2030593..2031273 (+) 681 WP_005703531.1 TIGR00153 family protein -
  DQL22_RS09795 (NCTC11096_01966) - 2031298..2032563 (+) 1266 WP_005703530.1 inorganic phosphate transporter -
  DQL22_RS09800 (NCTC11096_01967) - 2032631..2033242 (+) 612 WP_005702596.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49679.39 Da        Isoelectric Point: 8.3146

>NTDB_id=1025899 DQL22_RS09780 WP_111300988.1 2027979..2029352(-) (radA/sms) [Aggregatibacter aphrophilus strain NCTC11096]
MAKAKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLVSAPNNKADRFTGYAGETRAKIQTLDQISLQETPRFSSGLKE
LDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCDLSQKMTALYVTGEESLQQVAMRAKRLGLPPEKLHMLSETSVEQIC
HLADQLKPQIIVIDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIVMVGHVTKDGTLAGPKVLEHVIDCSLLL
EGETDSRYRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGDEQTSGSSVIVLWEGTRPLLVEIQALVDHSML
ANPRRVAVGLEQNRLALLLAVLHRHGGVQMGDQDVFVNVVGGVKVTETGADLALLLALISSFRNRPLPQDLVVFGEVGLA
GEIRPVPSGQERISEAAKHGFKRAILPFGNKPKHPVENMQVFTVKKLWDAIGVLDNF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1025899 DQL22_RS09780 WP_111300988.1 2027979..2029352(-) (radA/sms) [Aggregatibacter aphrophilus strain NCTC11096]
ATGGCAAAAGCGAAAACGGCATATGTGTGCAACGATTGCGGCGCGGAATTTTCTCGCTGGCAAGGACAGTGTTCCGCCTG
TAAAGCGTGGAACACCATCACCGAAGTGCGGTTGGTTTCTGCGCCAAATAATAAAGCGGATCGTTTTACCGGTTATGCCG
GAGAAACCCGCGCCAAAATCCAAACCTTAGATCAAATTAGCTTGCAAGAAACGCCGCGTTTTAGTAGCGGTCTTAAGGAA
TTGGATCGCGTATTGGGCGGTGGTGTTGTGCCAGGCAGTGCGATTTTGATTGGCGGCCATCCGGGCGCCGGGAAGAGTAC
GTTACTGTTACAGGTGATGTGCGATTTGTCGCAAAAAATGACCGCACTTTATGTGACCGGTGAGGAGTCTTTGCAACAAG
TGGCGATGCGTGCTAAACGCCTCGGGCTACCGCCGGAAAAACTCCACATGCTGTCGGAAACCTCTGTGGAACAAATTTGT
CATTTGGCGGATCAGTTAAAGCCACAGATTATTGTTATCGACTCCATTCAAGTCATGCACTTAGCCGATATTCAATCCTC
GCCCGGTAGCGTGGCGCAAGTGCGCGAATGCGCTTCTTTTTTAACCCGTTATGCGAAAACCCGTCAGGTCGCGATTGTGA
TGGTGGGTCATGTGACGAAAGACGGTACCTTGGCAGGGCCAAAAGTGTTGGAGCACGTCATTGACTGTTCTTTATTATTG
GAAGGCGAAACCGATTCGCGCTATCGTACGTTGCGTAGCCACAAAAATCGTTTCGGTGCCGTGAATGAATTAGGCGTGTT
TGCCATGACGGAGCAAGGGCTGAGAGAGGTAAAAAATCCATCAGCGATTTTTTTAAGTCGTGGTGATGAGCAGACCTCAG
GCAGTTCGGTAATTGTGCTGTGGGAAGGTACTCGACCGTTGTTGGTGGAAATTCAAGCCTTGGTGGATCATTCCATGTTG
GCTAATCCGCGCCGTGTTGCTGTGGGACTAGAACAAAACCGCCTTGCCTTATTGCTTGCCGTGCTACATCGCCACGGTGG
CGTACAAATGGGGGATCAGGATGTCTTCGTCAATGTCGTCGGTGGGGTCAAAGTTACGGAAACCGGTGCCGACTTAGCCT
TGCTCTTGGCCCTCATTTCTAGCTTCCGCAATCGCCCGTTACCGCAAGATTTGGTGGTTTTCGGTGAAGTAGGACTAGCG
GGTGAAATTCGCCCGGTGCCAAGCGGACAAGAACGTATCAGCGAAGCTGCCAAACACGGTTTTAAACGTGCTATTTTGCC
CTTTGGGAATAAGCCAAAACATCCAGTAGAAAATATGCAGGTGTTTACGGTGAAGAAGCTGTGGGATGCGATTGGGGTGT
TGGATAATTTTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

AAA domain (AAA_25)

(80-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.182

96.28

0.464
  radA Streptococcus mitis NCTC 12261

42.763

99.781

0.427
  radA Streptococcus mitis SK321

42.763

99.781

0.427
  radA Streptococcus pneumoniae Rx1

44.626

93.654

0.418
  radA Streptococcus pneumoniae D39

44.626

93.654

0.418
  radA Streptococcus pneumoniae R6

44.626

93.654

0.418
  radA Streptococcus pneumoniae TIGR4

44.626

93.654

0.418