Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK32_RS23360 Genome accession   NZ_AP027829
Coordinates   4741403..4742032 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017.17.03CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4736403..4747032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK32_RS23340 (VEE61_45000) ycbZ 4736804..4738564 (-) 1761 WP_000156518.1 Lon protease family protein -
  AABK32_RS23345 (VEE61_45010) matP 4738750..4739202 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK32_RS23350 (VEE61_45020) ompA 4739278..4740318 (-) 1041 WP_000750416.1 porin OmpA -
  AABK32_RS23355 (VEE61_45040) sulA 4740675..4741184 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  AABK32_RS23360 (VEE61_45050) sxy/tfoX 4741403..4742032 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK32_RS23365 (VEE61_45060) yccS 4741995..4744157 (-) 2163 WP_000875061.1 YccS family putative transporter -
  AABK32_RS23370 (VEE61_45070) yccF 4744167..4744613 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AABK32_RS23375 (VEE61_45080) helD 4744736..4746790 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=102586 AABK32_RS23360 WP_000839153.1 4741403..4742032(+) (sxy/tfoX) [Escherichia coli strain 2017.17.03CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102586 AABK32_RS23360 WP_000839153.1 4741403..4742032(+) (sxy/tfoX) [Escherichia coli strain 2017.17.03CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment