Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DQL19_RS02775 Genome accession   NZ_LS483480
Coordinates   543611..544114 (-) Length   167 a.a.
NCBI ID   WP_005656552.1    Uniprot ID   A0ABY1VU34
Organism   Haemophilus influenzae strain NCTC13377     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 538611..549114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL19_RS02750 (NCTC13377_00535) - 538747..539799 (+) 1053 WP_005658050.1 extracellular solute-binding protein -
  DQL19_RS02755 (NCTC13377_00536) hslU 539869..541203 (-) 1335 WP_013527418.1 HslU--HslV peptidase ATPase subunit -
  DQL19_RS02760 (NCTC13377_00537) hslV 541214..541741 (-) 528 WP_005649427.1 ATP-dependent protease subunit HslV -
  DQL19_RS02765 (NCTC13377_00538) aphA 541961..542668 (+) 708 WP_015701697.1 acid phosphatase AphA -
  DQL19_RS02770 - 542715..543511 (-) 797 Protein_516 IS3 family transposase -
  DQL19_RS02775 (NCTC13377_00539) luxS 543611..544114 (-) 504 WP_005656552.1 S-ribosylhomocysteine lyase Regulator
  DQL19_RS02780 (NCTC13377_00540) - 544444..544917 (-) 474 WP_005691326.1 YqaA family protein -
  DQL19_RS02785 (NCTC13377_00541) - 544917..545519 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  DQL19_RS02790 (NCTC13377_00542) - 545635..546012 (+) 378 WP_015701696.1 PRD domain-containing protein -
  DQL19_RS02795 (NCTC13377_00543) rsmG 546152..546763 (+) 612 WP_005652031.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DQL19_RS02800 (NCTC13377_00544) - 546889..547263 (+) 375 WP_015701695.1 ATP synthase subunit I -
  DQL19_RS02805 (NCTC13377_00545) atpB 547300..548088 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  DQL19_RS02810 (NCTC13377_00546) atpE 548144..548398 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  DQL19_RS02815 (NCTC13377_00547) atpF 548448..548918 (+) 471 WP_005652038.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18528.19 Da        Isoelectric Point: 4.8168

>NTDB_id=1025713 DQL19_RS02775 WP_005656552.1 543611..544114(-) (luxS) [Haemophilus influenzae strain NCTC13377]
MPLLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1025713 DQL19_RS02775 WP_005656552.1 543611..544114(-) (luxS) [Haemophilus influenzae strain NCTC13377]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCTCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment