Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DQM71_RS04540 Genome accession   NZ_LS483472
Coordinates   936308..937696 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain NCTC13421     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 931308..942696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM71_RS04515 (NCTC13421_00902) fdhD 931743..932534 (+) 792 WP_000187642.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  DQM71_RS04520 (NCTC13421_00903) - 932654..933046 (+) 393 WP_000119198.1 YkvA family protein -
  DQM71_RS04525 (NCTC13421_00904) - 933151..934218 (+) 1068 WP_000706080.1 4-phosphoerythronate dehydrogenase -
  DQM71_RS04530 (NCTC13421_00905) epmA 934215..935189 (+) 975 WP_000059544.1 EF-P lysine aminoacylase EpmA -
  DQM71_RS04535 (NCTC13421_00906) - 935248..936225 (-) 978 WP_000451848.1 Tim44 domain-containing protein -
  DQM71_RS04540 (NCTC13421_00907) radA/sms 936308..937696 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  DQM71_RS04545 (NCTC13421_00908) - 938185..939591 (+) 1407 WP_000070815.1 amino acid permease -
  DQM71_RS04550 (NCTC13421_00909) - 939732..939956 (+) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  DQM71_RS04555 (NCTC13421_00910) lysA 939979..941229 (+) 1251 WP_000011145.1 diaminopimelate decarboxylase -
  DQM71_RS04560 (NCTC13421_00911) dapF 941235..942080 (+) 846 WP_000923484.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=1025640 DQM71_RS04540 WP_000048860.1 936308..937696(-) (radA/sms) [Acinetobacter baumannii strain NCTC13421]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1025640 DQM71_RS04540 WP_000048860.1 936308..937696(-) (radA/sms) [Acinetobacter baumannii strain NCTC13421]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAGCTAGAACCCACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTTGCTAACATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATCTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGCCATGTGACCAAAGAAGGTGCACTGGCAGGTCCGCGTGTTTTAGAGCATATGGTGGACTGCGTACTTTAC
TTTGAAGGTCAATCAGACTCCCGCTACCGTATGATTCGTGCTGTTAAAAACCGTTTTGGTGCAGTGAATGAGCTTGGCGT
ATTTGGCATGACTGATAAAGGCCTACGGGAAGTGGCCAATCCTTCTGCTATTTTCTTAAGTCGTTATGATGAAGCGATTC
CCGGCTCAATTGTCATGATTAGTCGTGAAGGAACTCGCCCTCTTTTGGTCGAGGTACAAGCTTTAGTTGATGATGCTCAA
GGACAACCACGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGTGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTACGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTCTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGGTTTAAATACGTCATCTTACC
AAGAGGTAACGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422