Detailed information NTG1025547

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DQN71_RS05035
• Genome accession: NZ_LS483471
• Coordinates: 988372..989484 (+)
• Length: 370 a.a.
• NCBI ID: WP_002895944.1
• Uniprot ID: A0ABM5NJD0
• Organism: Streptococcus cristatus strain NCTC13807
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 983372..994484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN71_RS05010 (NCTC13807_00961)	-	983915..985279 (+)	1365	WP_111694529.1	ISLre2 family transposase	-
DQN71_RS05015 (NCTC13807_00962)	rpsU	985617..985793 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
DQN71_RS05025 (NCTC13807_00963)	mscL	986043..986429 (-)	387	WP_015604866.1	large conductance mechanosensitive channel protein MscL	-
DQN71_RS05030 (NCTC13807_00964)	dnaG	986564..988369 (+)	1806	WP_041826791.1	DNA primase	-
DQN71_RS05035 (NCTC13807_00965)	rpoS	988372..989484 (+)	1113	WP_002895944.1	RNA polymerase sigma factor RpoD	Regulator
DQN71_RS05040 (NCTC13807_00966)	-	989611..989949 (+)	339	WP_015604868.1	metal-sulfur cluster assembly factor	-
DQN71_RS05045 (NCTC13807_00967)	birA	990173..991108 (-)	936	WP_015604869.1	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	-
DQN71_RS05050 (NCTC13807_00968)	-	991123..992124 (-)	1002	WP_111694530.1	LacI family DNA-binding transcriptional regulator	-
DQN71_RS05055 (NCTC13807_00969)	-	992324..993502 (+)	1179	WP_015604871.1	galactokinase	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42318.94 Da
• Isoelectric Point: 4.4233

>NTDB_id=1025547 DQN71_RS05035 WP_002895944.1 988372..989484(+) (rpoS) [Streptococcus cristatus strain NCTC13807]
MATKQKEVTTLDVQIAEFIRNHKQTGVATDDEINDQLVIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLSNEEEQELAILVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=1025547 DQN71_RS05035 WP_002895944.1 988372..989484(+) (rpoS) [Streptococcus cristatus strain NCTC13807]
ATGGCTACAAAACAAAAAGAAGTAACAACATTAGACGTTCAAATTGCAGAATTCATTCGCAATCACAAGCAGACAGGTGT
AGCGACAGACGATGAAATCAATGACCAACTGGTCATTCCTTTCACTTTGGATGCTGATGGGATTGAGGATTTGCTGCAAC
GCATTCAGGATGCGGGCATTTCTATCACGGATAAGGAAGGAAATCCCAGTGCGCGTGTCTTGAATACTGAAGAGGAAGAA
GCGGAGTTGACGGATGAAGAGCTCTTGGGTAGCAATTCAGCCAAGGTCAATGACCCAGTCCGCATGTATCTGAAAGAAAT
CGGAGTTGTACCGCTTCTCAGCAATGAAGAAGAACAGGAACTGGCAATCTTGGTAGAGCAGGGTGACTTGGAAGCCAAGC
AGCGTCTGGCTGAGGCCAATCTTCGTCTGGTTGTTTCCATTGCTAAGCGTTATGTTGGCCGTGGTATGCAGTTCCTTGAT
TTGATTCAAGAAGGAAATATGGGACTGATGAAGGCCGTTGATAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACTTA
TGCGACTTGGTGGATTCGTCAGGCTATTACTCGTGCAATTGCTGACCAAGCTCGGACTATTCGGATTCCAGTTCATATGG
TGGAAACCATTAACAAATTAGTTCGCGAACAACGCAATCTCTTGCAGGAATTGGGTCAAGACCCAACACCAGAGCAAATC
GCTGAGCGCATGGATATGACACCAGATAAGGTTCGTGAGATTCTCAAGATTGCTCAGGAGCCAGTTTCTTTGGAAACACC
TATCGGTGAGGAAGATGACAGTCATCTGGGAGACTTTATCGAAGATGAAGTGATTGAAAATCCAGTTGACTACACAACTC
GTGTCGTTCTCCGCGAGCAGCTGGATGAGGTCTTGGATACGCTGACAGACCGCGAGGAAAATGTCTTACGTCTGCGCTTT
GGTCTGGACGATGGAAAAATGCGGACGCTGGAAGATGTCGGCAAGGTCTTCAATGTCACTCGCGAGCGGATTCGCCAGAT
TGAAGCCAAGGCTCTGCGTAAACTTCGCCATCCAAGCCGCAGCAAACCACTAAGAGACTTTATCGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.575	78.919	0.368