Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   DQN71_RS00250 Genome accession   NZ_LS483471
Coordinates   30238..32184 (-) Length   648 a.a.
NCBI ID   WP_015604178.1    Uniprot ID   A0ABM5NH52
Organism   Streptococcus cristatus strain NCTC13807     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 25238..37184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS00220 (NCTC13807_00041) - 25743..26708 (+) 966 WP_015604173.1 ribose-phosphate diphosphokinase -
  DQN71_RS00225 (NCTC13807_00042) - 26833..28005 (+) 1173 WP_015604174.1 pyridoxal phosphate-dependent aminotransferase -
  DQN71_RS00230 (NCTC13807_00043) recO 27998..28795 (+) 798 WP_015604175.1 DNA repair protein RecO Machinery gene
  DQN71_RS00235 (NCTC13807_00044) plsX 28776..29780 (+) 1005 WP_015604176.1 phosphate acyltransferase PlsX -
  DQN71_RS00240 (NCTC13807_00045) - 29777..30019 (+) 243 WP_015604177.1 acyl carrier protein -
  DQN71_RS00250 (NCTC13807_00046) lytF 30238..32184 (-) 1947 WP_015604178.1 GBS Bsp-like repeat-containing protein Regulator
  DQN71_RS00255 (NCTC13807_00047) purD 32561..33826 (+) 1266 WP_015604179.1 phosphoribosylamine--glycine ligase -
  DQN71_RS00260 (NCTC13807_00048) purE 34051..34539 (+) 489 WP_015604180.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  DQN71_RS00265 (NCTC13807_00049) purK 34526..35617 (+) 1092 WP_015604181.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQN71_RS00270 (NCTC13807_00050) - 35619..35882 (+) 264 WP_002931759.1 hypothetical protein -
  DQN71_RS00275 (NCTC13807_00051) - 35903..36130 (+) 228 WP_015604182.1 hypothetical protein -
  DQN71_RS00280 (NCTC13807_00052) - 36134..36826 (+) 693 WP_015604183.1 aspartate/glutamate racemase family protein -
  DQN71_RS00285 (NCTC13807_00053) - 36829..36924 (+) 96 Protein_30 phosphoribosylaminoimidazole carboxylase -

Sequence

Protein


Download         Length: 648 a.a.        Molecular weight: 71556.27 Da        Isoelectric Point: 8.5260

>NTDB_id=1025504 DQN71_RS00250 WP_015604178.1 30238..32184(-) (lytF) [Streptococcus cristatus strain NCTC13807]
MKKYQKLFLLSGAVLGLFASHSTVQAVASTEAGNKVLGPTDRASNVTVNVTGDTAQIHYARSKAQVPYTISHAVWSDENG
QDDLKWYTTPQTSSTAVDLRQHAGYGTLHVHTYININGKMIGLNGTTFTVNKPASKTSVTTSGQIGRINFTRNKDQGNSK
IVHAVWSDENGGDDLNWYEAGQESTEFNFSKHKGYGKYFVDTYENKNGKMIYQSGTTFHLEKPNPTIQTSFPEPGIMEIL
IKNLPDTMYKVTVPTWSENKGQDDLQWYEASKNSDGSYRVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGTTATIDV
GKLPSPEEQKPLFSVENINPEQGTYTVKISETSTSKPIQSVRVPIWSTHKQSNIKWYEASNNGDGTFTAQFNIRNHQALS
GNYINHIYVKYKDGSEHSYATDSVTLSAENIKARVSVNKISAYNYEVTVSDAFGPGTISLPTWSEVNGQDDIKWYTANKV
GDGLYKFTINTQQHAGNGLFHTHVYRNLNGQMTGLTGTSYQVQKPTTPEPTLYTPDYAGASSYPHGQCTWGAKVLAPWAG
PYWGNGGQWAASARAAGFRTGSTPQVGAIICWTDGGYGHVGVVTHVESNTRIQIKESNYAGKQYIGNFRGWFNPYAAGQG
AVSYIYPK

Nucleotide


Download         Length: 1947 bp        

>NTDB_id=1025504 DQN71_RS00250 WP_015604178.1 30238..32184(-) (lytF) [Streptococcus cristatus strain NCTC13807]
ATGAAGAAATATCAGAAGCTGTTTTTATTATCCGGAGCAGTCCTTGGGCTATTTGCCAGTCATTCCACGGTTCAAGCTGT
TGCATCGACTGAAGCTGGGAATAAAGTCCTAGGTCCCACTGATCGTGCCAGCAATGTAACCGTCAATGTCACTGGGGATA
CGGCACAGATTCATTACGCCCGCTCCAAGGCTCAGGTTCCCTATACCATTTCCCACGCGGTCTGGTCCGACGAAAATGGG
CAGGATGATTTGAAATGGTACACTACGCCTCAAACATCCAGCACAGCCGTTGACCTTCGGCAGCACGCTGGCTACGGCAC
CTTACATGTGCACACTTACATTAATATCAATGGGAAAATGATTGGCTTGAATGGCACTACCTTCACTGTTAATAAACCTG
CTAGCAAGACAAGCGTCACAACATCTGGACAAATCGGCCGAATCAATTTTACGCGAAATAAAGACCAAGGGAACTCAAAA
ATTGTCCATGCAGTTTGGTCTGATGAAAATGGTGGCGATGACCTTAATTGGTATGAAGCTGGGCAAGAGAGTACTGAATT
TAACTTTTCTAAGCACAAGGGATATGGAAAATATTTCGTAGATACTTATGAAAATAAAAATGGCAAAATGATTTACCAAT
CAGGTACCACTTTCCATCTCGAAAAGCCTAATCCGACCATTCAGACAAGCTTCCCTGAACCTGGCATTATGGAAATCCTT
ATCAAAAATCTTCCTGACACCATGTACAAGGTCACTGTGCCAACTTGGTCTGAAAACAAAGGTCAGGATGATTTGCAATG
GTACGAGGCAAGTAAAAATTCTGATGGCAGTTACAGAGTAAGAGTAGAACTGAAGAAACACAATTACGATACAGGAACCT
ACCATATCCATCTCTACGGTGAAAGCTATGTCAAGCCTGAATTTACAGGATTAGCAGGAACAACTGCTACGATAGATGTC
GGAAAGCTGCCTTCCCCAGAAGAGCAAAAACCGCTTTTCTCTGTTGAAAATATCAATCCTGAGCAGGGAACCTATACTGT
AAAAATCAGTGAGACTTCAACATCTAAGCCAATTCAGTCCGTTCGCGTTCCCATCTGGAGCACCCATAAACAAAGCAATA
TCAAATGGTATGAGGCAAGTAATAATGGAGATGGGACCTTTACTGCACAATTTAATATTCGCAACCACCAAGCCTTATCT
GGCAATTATATCAATCATATCTACGTCAAATATAAAGATGGCAGCGAACATAGCTATGCGACAGACAGCGTCACTCTCTC
TGCTGAAAATATCAAAGCCAGGGTTTCTGTCAATAAAATATCTGCCTACAATTACGAAGTGACCGTTTCCGATGCTTTTG
GCCCAGGAACCATTTCTCTACCAACTTGGTCAGAGGTCAATGGCCAGGATGACATCAAATGGTACACTGCTAACAAAGTG
GGCGATGGCTTGTATAAATTTACCATCAATACGCAACAGCATGCTGGAAATGGACTCTTCCATACCCATGTTTACCGTAA
TCTCAATGGTCAGATGACTGGACTTACAGGCACCAGCTATCAGGTTCAAAAACCAACTACGCCTGAGCCAACCCTCTACA
CCCCTGATTATGCGGGAGCCTCCTCTTATCCTCATGGTCAGTGTACTTGGGGAGCAAAAGTATTGGCTCCTTGGGCTGGT
CCTTACTGGGGCAACGGTGGCCAATGGGCAGCTAGCGCACGCGCAGCTGGTTTCCGAACAGGAAGCACACCACAAGTCGG
AGCCATCATCTGCTGGACCGATGGTGGTTATGGGCATGTCGGTGTTGTCACCCATGTCGAATCCAACACCCGCATCCAAA
TCAAAGAATCCAACTATGCGGGCAAACAGTATATTGGCAACTTCCGCGGCTGGTTCAATCCCTACGCCGCTGGTCAAGGA
GCTGTCAGCTATATCTATCCAAAATAA

Domains

Predicted by InterProScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(438-519)

GBS Bsp-like repeat (GBS_Bsp-like)

(155-216)

GBS Bsp-like repeat (GBS_Bsp-like)

(233-302)

GBS Bsp-like repeat (GBS_Bsp-like)

(335-421)

GBS Bsp-like repeat (GBS_Bsp-like)

(69-127)

CHAP domain (CHAP)

(541-618)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.487

81.173

0.361

Multiple sequence alignment