Detailed information NTG1025036

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: AB1I50_RS00825
• Genome accession: NZ_CP162392
• Coordinates: 181332..182696 (-)
• Length: 454 a.a.
• NCBI ID: WP_407724330.1
• Uniprot ID: -
• Organism: Ruminococcus sp. JL13D9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 176332..187696

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1I50_RS00810	-	177550..178737 (+)	1188	WP_407724327.1	hypothetical protein	-
AB1I50_RS00815	-	179464..180444 (+)	981	WP_407724328.1	tyrosine-type recombinase/integrase	-
AB1I50_RS00820	-	180679..181335 (-)	657	WP_407724329.1	DUF6873 family GME fold protein	-
AB1I50_RS00825	radA	181332..182696 (-)	1365	WP_407724330.1	DNA repair protein RadA	Machinery gene
AB1I50_RS00830	-	182709..183413 (-)	705	WP_407724331.1	N-acetylmuramoyl-L-alanine amidase	-
AB1I50_RS00835	-	183568..184440 (+)	873	WP_407724332.1	methionyl aminopeptidase	-
AB1I50_RS00840	-	184480..187089 (-)	2610	WP_407724333.1	energy-coupling factor transporter ATPase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49710.06 Da
• Isoelectric Point: 6.7240

>NTDB_id=1025036 AB1I50_RS00825 WP_407724330.1 181332..182696(-) (radA) [Ruminococcus sp. JL13D9]
MAKIKSVYICSECGYESPKWYGKCPSCGEWNTMNEEIKDTSKSSPTVKSRSFSSYAKPYSITEISTDDEHRYDTGCKELN
RVLGGGIVKGSLILLGGDPGIGKSTVLMQICQFMGSSLKILYVSGEESKRQLKLRANRLGVNSPNLYVMTETDVEVVCEQ
IKNVKPDLVMVDSIQTMNLTELNSSPGSVTQVRECTNMLMRTAKGMDVPMFVVGHVNKEGSIAGPKVLEHIVDTVLHFEG
DKQMACRILRAVKNRYGSTNEIGVFEMTDTGLKEVENPSVMLLSGRPKNVSGTCVTCTIEGSRPILAETQGLATQSGYGN
ARRMATGYDYNRLSMLLAVLEKRAGYYFSNNDAYINIVGGLRVDEPAIDLSIAMALISSLKDTPVDENAVVFGEIGLAGE
IRSVSQAQMRINEAVRLGFTRIVLPYHNLKGVHCSDAELIGVRNIREAFEAVSV

Nucleotide

• Length: 1365 bp

>NTDB_id=1025036 AB1I50_RS00825 WP_407724330.1 181332..182696(-) (radA) [Ruminococcus sp. JL13D9]
ATGGCTAAGATTAAAAGCGTTTATATTTGCTCCGAGTGCGGCTATGAGTCGCCCAAATGGTACGGAAAATGTCCGTCCTG
CGGAGAATGGAATACAATGAACGAGGAGATTAAGGACACCTCAAAAAGCTCTCCCACGGTAAAAAGCCGTTCGTTTTCGT
CATACGCCAAGCCGTATTCGATTACCGAGATCTCGACCGATGACGAGCACCGTTACGACACCGGCTGTAAGGAGCTCAAC
CGCGTGCTCGGCGGCGGAATTGTAAAGGGAAGCTTGATTTTGCTCGGCGGCGACCCGGGAATAGGAAAATCCACCGTGCT
TATGCAGATTTGCCAGTTTATGGGAAGCTCGCTTAAAATCCTCTATGTTTCGGGCGAGGAGAGCAAGCGCCAGCTAAAAC
TGCGCGCAAACAGATTAGGGGTAAATTCTCCTAACCTTTACGTTATGACCGAAACCGATGTTGAGGTTGTCTGCGAGCAA
ATCAAGAACGTCAAGCCCGATTTGGTGATGGTCGACTCTATTCAGACTATGAACCTTACAGAGCTGAATTCTTCACCGGG
AAGCGTTACCCAGGTGCGCGAGTGCACAAATATGCTTATGCGGACAGCCAAGGGAATGGACGTGCCGATGTTCGTTGTCG
GCCACGTCAACAAGGAAGGCTCGATTGCAGGCCCCAAGGTGCTCGAGCATATTGTCGATACCGTGCTCCACTTTGAGGGC
GACAAGCAAATGGCTTGCAGAATTTTGCGCGCGGTTAAAAACCGCTACGGCTCTACAAACGAAATCGGCGTGTTCGAGAT
GACCGACACAGGCTTAAAAGAGGTCGAAAACCCGTCCGTAATGCTGCTTTCGGGCAGACCGAAGAATGTTTCGGGAACGT
GCGTAACGTGCACCATAGAGGGCTCACGCCCGATTTTGGCGGAAACTCAGGGACTTGCCACTCAAAGCGGCTACGGTAAT
GCCAGAAGAATGGCTACAGGCTACGACTACAACCGACTTTCTATGCTCCTTGCGGTGCTCGAAAAGCGCGCGGGGTATTA
TTTCTCGAACAATGACGCTTATATCAACATCGTAGGCGGTCTCAGGGTGGACGAGCCCGCGATTGATTTGTCGATTGCGA
TGGCGCTTATCAGCAGCTTAAAGGACACTCCTGTTGACGAAAATGCCGTGGTTTTCGGAGAAATCGGACTTGCAGGCGAA
ATCCGCTCGGTTTCTCAGGCTCAAATGAGGATTAACGAGGCTGTAAGGCTCGGATTTACGCGCATTGTTCTGCCGTATCA
CAACCTAAAGGGCGTTCACTGCAGTGATGCAGAGCTAATCGGAGTACGAAACATAAGAGAGGCGTTTGAGGCTGTCAGCG
TATGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (343-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (63-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	54.425	99.559	0.542
radA	Streptococcus pneumoniae Rx1	48.344	99.78	0.482
radA	Streptococcus pneumoniae D39	48.344	99.78	0.482
radA	Streptococcus pneumoniae R6	48.344	99.78	0.482
radA	Streptococcus pneumoniae TIGR4	48.344	99.78	0.482
radA	Streptococcus mitis NCTC 12261	48.344	99.78	0.482
radA	Streptococcus mitis SK321	48.344	99.78	0.482