Detailed information NTG1025026

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: AB1I49_RS06295
• Genome accession: NZ_CP162391
• Coordinates: 1288424..1289788 (+)
• Length: 454 a.a.
• NCBI ID: WP_407720474.1
• Uniprot ID: -
• Organism: Ruminococcus sp. JE7B6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1283424..1294788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1I49_RS06280	-	1284059..1286626 (+)	2568	WP_407720472.1	ECF transporter S component	-
AB1I49_RS06285	-	1286670..1287542 (-)	873	WP_316609240.1	methionyl aminopeptidase	-
AB1I49_RS06290	-	1287701..1288411 (+)	711	WP_407720473.1	N-acetylmuramoyl-L-alanine amidase	-
AB1I49_RS06295	radA	1288424..1289788 (+)	1365	WP_407720474.1	DNA repair protein RadA	Machinery gene
AB1I49_RS06300	-	1289785..1290432 (+)	648	WP_407720475.1	DUF6873 family GME fold protein	-
AB1I49_RS06305	-	1290429..1291217 (+)	789	WP_407720476.1	class I SAM-dependent methyltransferase	-
AB1I49_RS06310	-	1291240..1292220 (-)	981	WP_316611607.1	tyrosine recombinase XerC	-
AB1I49_RS06315	-	1292396..1293466 (-)	1071	WP_316609248.1	hypothetical protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49959.55 Da
• Isoelectric Point: 6.2632

>NTDB_id=1025026 AB1I49_RS06295 WP_407720474.1 1288424..1289788(+) (radA) [Ruminococcus sp. JE7B6]
MAKIKSVYICSECGYETPKWVGKCPSCGEWNTMNEEIKDTAKAAPAVRTRTSMTYAQPYSIREISTDDEHRYDTGCHELN
RVLGGGIVKGSLILLGGDPGIGKSTVLMQICQFLGDTLKILYVSGEESKRQLKLRAIRLEVDSPNLFIMTETDVEVVCEQ
IKNIKPDLVMIDSIQTMNLSELSSSPGSVTQVRECTNILMRTAKSLDIPMFVVGHVNKEGSIAGPKVLEHIVDTVLHFEG
DKQMSCRILRAVKNRYGSTNEIGVFEMTDKGLKEVENPSVMLLSGRPSKVSGTCVTCTIEGSRPILAETQGLATQSGYGN
ARRMATGYDYNRLSMILAVLEKRSGYFFSNSDTYINIVGGLRVDEPAIDLSIAMALVSSLKDEPLYEKAVVFGEIGLAGE
IRSVSQAQMRVNEAVRLGFDRIILPFHNLKGVQCDDAKLIGVKNIREAYEAITQ

Nucleotide

• Length: 1365 bp

>NTDB_id=1025026 AB1I49_RS06295 WP_407720474.1 1288424..1289788(+) (radA) [Ruminococcus sp. JE7B6]
ATGGCAAAAATAAAAAGCGTTTACATTTGCTCGGAATGCGGCTATGAGACCCCGAAATGGGTCGGAAAATGCCCGTCCTG
CGGCGAATGGAATACGATGAATGAAGAAATCAAGGACACCGCTAAAGCCGCTCCTGCGGTCAGAACGCGCACTTCAATGA
CATATGCGCAGCCGTATTCAATCCGCGAGATTTCAACAGACGACGAGCACCGCTATGATACAGGCTGTCACGAGCTCAAC
CGCGTACTCGGCGGCGGTATCGTCAAGGGAAGTCTGATTCTCCTGGGCGGCGACCCGGGTATCGGTAAATCAACGGTGCT
CATGCAGATATGCCAGTTTCTCGGCGACACGCTGAAAATTCTCTATGTATCCGGCGAGGAATCAAAGCGTCAGCTGAAGC
TGCGCGCGATCCGCCTCGAGGTGGACTCTCCTAATCTCTTTATCATGACCGAAACCGACGTTGAGGTTGTATGTGAGCAG
ATCAAGAATATCAAGCCCGACCTTGTTATGATAGACTCTATCCAGACCATGAACCTCTCTGAGTTAAGCTCCTCGCCGGG
CAGCGTCACTCAGGTGAGGGAATGTACCAATATCCTCATGCGAACCGCTAAATCGCTCGATATCCCGATGTTTGTTGTCG
GACATGTCAACAAGGAAGGTTCAATAGCAGGCCCGAAGGTGCTTGAGCACATCGTAGACACCGTACTTCACTTTGAGGGC
GACAAGCAGATGAGCTGCAGGATATTGCGCGCGGTCAAAAACCGCTACGGCTCCACAAATGAAATCGGCGTTTTTGAAAT
GACCGACAAGGGCTTAAAAGAAGTAGAAAACCCGTCTGTAATGCTGCTTTCGGGCAGACCGAGCAAGGTGTCGGGTACCT
GCGTAACCTGTACGATCGAAGGCTCGCGTCCGATTCTCGCTGAAACACAGGGTCTTGCCACACAGTCGGGTTACGGCAAC
GCGCGCAGAATGGCAACAGGCTACGATTACAACCGCCTTTCCATGATACTCGCGGTGCTCGAAAAACGCTCGGGCTACTT
TTTCTCAAACAGCGATACATATATCAATATTGTCGGAGGTCTGAGAGTGGACGAGCCTGCGATTGATTTGTCGATTGCGA
TGGCTCTTGTCAGCAGTCTGAAGGACGAGCCTTTATATGAAAAAGCCGTTGTGTTCGGTGAAATCGGACTCGCGGGTGAA
ATCCGTTCCGTTTCTCAGGCACAGATGCGCGTCAATGAGGCTGTGCGGCTCGGCTTTGACAGAATCATTCTGCCTTTCCA
CAACCTAAAGGGCGTTCAGTGCGATGACGCAAAGCTGATCGGCGTTAAGAATATCAGAGAAGCGTACGAGGCAATAACCC
AATGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (64-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (342-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.643	100	0.526
radA	Streptococcus pneumoniae Rx1	48.246	100	0.485
radA	Streptococcus pneumoniae D39	48.246	100	0.485
radA	Streptococcus pneumoniae R6	48.246	100	0.485
radA	Streptococcus pneumoniae TIGR4	48.246	100	0.485
radA	Streptococcus mitis NCTC 12261	48.246	100	0.485
radA	Streptococcus mitis SK321	48.246	100	0.485