Detailed information NTG1024993

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AB3489_RS09945
• Genome accession: NZ_CP162385
• Coordinates: 2016539..2017465 (-)
• Length: 308 a.a.
• NCBI ID: WP_368292746.1
• Uniprot ID: -
• Organism: Dehalobacter sp. TBBPA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2011539..2022465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3489_RS09930 (AB3489_09930)	-	2013263..2014561 (-)	1299	WP_019225648.1	amidohydrolase	-
AB3489_RS09935 (AB3489_09935)	mtnA	2014676..2015710 (-)	1035	WP_368292744.1	S-methyl-5-thioribose-1-phosphate isomerase	-
AB3489_RS09940 (AB3489_09940)	mtnP	2015754..2016536 (-)	783	WP_368292745.1	S-methyl-5'-thioadenosine phosphorylase	-
AB3489_RS09945 (AB3489_09945)	pilA	2016539..2017465 (-)	927	WP_368292746.1	signal recognition particle-docking protein FtsY	Machinery gene
AB3489_RS09950 (AB3489_09950)	smc	2018005..2021598 (-)	3594	WP_368294617.1	chromosome segregation protein SMC	-
AB3489_RS09955 (AB3489_09955)	rnc	2021603..2022349 (-)	747	WP_015044196.1	ribonuclease III	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 33544.42 Da
• Isoelectric Point: 4.8858

>NTDB_id=1024993 AB3489_RS09945 WP_368292746.1 2016539..2017465(-) (pilA) [Dehalobacter sp. TBBPA1]
MAGIFSRLKERLTKTREGFVGKVEQLFTGSGKIDEDLYEELEEILLQSDVGVNTTLKLVGMLRASVKEQKINDRSELRDV
LQEHITALLGEEIPLSFADSKPTVYLIVGVNGVGKTTTIGKLAKNLQGQGKNVLLAAGDTFRAAAIEQLEVWGERSGTEV
IKQSEGADPAAVAFDALHAARSRNTDVLLIDTAGRLHNKVNLMKELTKIKKVVEREVPDAPHEVLLVLDATTGQNAIQQV
KLFKEAVDVTGIILTKLDGTAKGGVILGIRNEADIPVKLIGIGEGAEDLRPFEPREFAQALFDRSEEE

Nucleotide

• Length: 927 bp

>NTDB_id=1024993 AB3489_RS09945 WP_368292746.1 2016539..2017465(-) (pilA) [Dehalobacter sp. TBBPA1]
GTGGCGGGAATATTTTCCAGACTTAAAGAGCGCCTGACCAAAACCAGAGAAGGTTTTGTCGGCAAAGTTGAACAGCTCTT
TACCGGCTCAGGCAAAATTGATGAAGATCTTTATGAAGAATTGGAAGAGATTCTACTTCAATCAGATGTAGGTGTCAATA
CAACGCTGAAATTGGTTGGAATGCTGCGTGCATCCGTCAAAGAACAAAAAATTAACGACCGCTCCGAGCTGAGGGATGTA
CTGCAGGAACATATTACTGCGCTATTGGGTGAAGAGATTCCCTTGTCTTTTGCAGATTCCAAGCCCACCGTCTATCTGAT
CGTTGGTGTCAACGGTGTAGGAAAAACGACCACGATCGGCAAGCTCGCCAAAAATCTGCAGGGCCAGGGTAAAAATGTTT
TGCTGGCGGCAGGGGATACTTTCCGAGCAGCAGCGATCGAGCAATTGGAAGTATGGGGAGAACGGTCCGGGACAGAGGTC
ATCAAACAGTCGGAGGGGGCTGATCCTGCTGCGGTGGCTTTCGATGCGCTTCATGCGGCAAGATCCCGGAATACAGATGT
CCTATTGATCGATACTGCCGGAAGACTGCACAATAAAGTGAATCTGATGAAAGAATTGACCAAGATCAAAAAGGTGGTCG
AGCGCGAAGTTCCGGATGCCCCGCACGAGGTGCTGCTGGTACTCGATGCGACGACCGGACAGAACGCCATTCAGCAGGTG
AAACTGTTCAAGGAAGCAGTCGATGTGACAGGGATCATACTCACCAAGTTGGACGGTACAGCTAAAGGCGGTGTAATCCT
GGGGATCCGCAATGAAGCGGATATCCCGGTAAAATTGATTGGAATCGGTGAAGGGGCAGAGGATTTAAGGCCTTTTGAAC
CGAGGGAATTTGCCCAGGCACTGTTTGACCGTTCTGAGGAGGAATAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (20-83)

• SRP54-type protein, GTPase domain (SRP54) (102-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.835	98.377	0.49