Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3489_RS02025 Genome accession   NZ_CP162385
Coordinates   418545..419885 (+) Length   446 a.a.
NCBI ID   WP_019225188.1    Uniprot ID   A0A1C2Y1Z7
Organism   Dehalobacter sp. TBBPA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 413545..424885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3489_RS02005 (AB3489_02005) - 413945..414418 (+) 474 WP_368293790.1 CtsR family transcriptional regulator -
  AB3489_RS02010 (AB3489_02010) - 414433..414957 (+) 525 WP_368293791.1 UvrB/UvrC motif-containing protein -
  AB3489_RS02015 (AB3489_02015) - 414954..416021 (+) 1068 WP_020491339.1 protein arginine kinase -
  AB3489_RS02020 (AB3489_02020) - 416048..418531 (+) 2484 WP_368293792.1 ATP-dependent Clp protease ATP-binding subunit -
  AB3489_RS02025 (AB3489_02025) radA 418545..419885 (+) 1341 WP_019225188.1 DNA repair protein RadA Machinery gene
  AB3489_RS02030 (AB3489_02030) - 420039..420431 (-) 393 WP_019225189.1 hypothetical protein -
  AB3489_RS02035 (AB3489_02035) - 420702..421868 (+) 1167 WP_019225190.1 PIN/TRAM domain-containing protein -
  AB3489_RS02040 (AB3489_02040) ispD 421846..423033 (+) 1188 WP_368293793.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB3489_RS02045 (AB3489_02045) gltX 423141..424598 (+) 1458 WP_368294563.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48840.18 Da        Isoelectric Point: 5.6956

>NTDB_id=1024986 AB3489_RS02025 WP_019225188.1 418545..419885(+) (radA) [Dehalobacter sp. TBBPA1]
MAGPKTKFYCRECGQESARWLGRCPGCGEWNTLIEERVEKSKPTEHRGIVQAIPLTEIQTMEGQRLDTGSPELNRVFGGG
VVEGSFVLLSGEPGIGKSTLFLQMAEYLSRKENVLYVSGEESARQIKLRADRMELSSSRVHILADNSLEAVRSEVLNKGY
KVVFIDSIQTMLLEDVQSAPGSVSQVREGASFLLKLAKENEITVFLAGHITKEGAIAGPRVLEHMVDTVLYFEGDQHHIF
RLLRAVKNRFGPANEIGVFEMRGCGLADVTNPSMFFMGDHTQVSAGSGVAVVMEGTRPLLVEVQALVTSSIFAPPRRTVN
GMDYHRLLMLLAVLDKRAGYAFGTRDVFVNIAGGLDVDEPAADLAVIASVMSGIKDQPLGNMALIGELGLTGEIRGVSHI
EQRIREAEKFGFQNCLVPKVNADSIGKTDCRIIPVKNIEEVLDFLF

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1024986 AB3489_RS02025 WP_019225188.1 418545..419885(+) (radA) [Dehalobacter sp. TBBPA1]
TTGGCAGGTCCGAAGACGAAGTTCTATTGCCGGGAATGCGGGCAGGAAAGCGCGAGATGGCTTGGAAGGTGTCCCGGATG
CGGTGAATGGAATACACTGATTGAGGAGCGCGTAGAAAAATCCAAACCTACAGAACACAGAGGGATCGTTCAGGCGATCC
CTCTGACTGAAATCCAAACGATGGAAGGGCAGAGACTTGATACCGGAAGTCCGGAACTTAACCGGGTTTTCGGGGGAGGG
GTTGTCGAAGGGTCCTTTGTTCTATTAAGCGGGGAGCCCGGGATTGGCAAATCCACTTTGTTTCTGCAAATGGCAGAATA
TCTTTCCCGGAAGGAAAATGTGCTTTATGTGTCGGGAGAGGAATCTGCCCGGCAAATCAAACTCAGGGCTGACAGAATGG
AGCTTTCTTCTTCCCGGGTACATATACTCGCCGATAATTCCCTGGAAGCAGTACGTTCGGAGGTGCTGAACAAAGGCTAT
AAAGTCGTTTTTATTGATTCGATCCAGACAATGCTGCTCGAAGACGTTCAGTCTGCACCCGGAAGCGTCAGCCAGGTAAG
GGAAGGGGCTTCTTTTTTGCTGAAACTGGCCAAAGAAAATGAGATTACGGTTTTCCTGGCCGGCCATATTACAAAGGAGG
GTGCGATTGCCGGACCCAGGGTTCTGGAGCACATGGTCGATACGGTCCTGTATTTTGAAGGAGATCAGCACCATATTTTC
CGTCTGCTGCGGGCAGTTAAAAACCGTTTTGGTCCGGCCAACGAAATTGGGGTATTTGAGATGAGAGGCTGCGGTCTAGC
TGATGTTACAAATCCCTCCATGTTTTTTATGGGCGATCATACACAGGTATCTGCTGGTTCCGGGGTGGCTGTCGTGATGG
AAGGAACAAGGCCGCTCTTAGTGGAAGTCCAGGCTTTGGTAACATCGTCCATCTTTGCGCCGCCGAGAAGAACCGTAAAC
GGGATGGATTACCACCGCCTGCTGATGCTTCTGGCAGTCCTGGACAAACGAGCCGGGTACGCTTTTGGCACCCGGGATGT
TTTTGTCAATATTGCCGGGGGTCTCGATGTGGATGAACCGGCAGCGGATCTTGCCGTTATTGCCTCTGTGATGTCGGGAA
TTAAAGATCAGCCGCTTGGAAATATGGCTTTAATCGGGGAACTCGGTTTGACCGGAGAAATTAGAGGGGTTTCTCATATT
GAGCAGCGGATCAGAGAAGCGGAAAAATTTGGTTTCCAAAATTGCCTGGTACCAAAAGTCAATGCAGACAGTATCGGGAA
GACCGATTGCCGAATCATTCCGGTTAAGAACATTGAGGAAGTACTGGATTTTCTTTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-214)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2Y1Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.552

100

0.513
  radA Streptococcus mitis NCTC 12261

48.59

100

0.502
  radA Streptococcus pneumoniae Rx1

48.59

100

0.502
  radA Streptococcus pneumoniae D39

48.59

100

0.502
  radA Streptococcus pneumoniae R6

48.59

100

0.502
  radA Streptococcus pneumoniae TIGR4

48.59

100

0.502
  radA Streptococcus mitis SK321

48.59

100

0.502

Multiple sequence alignment