Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AI22_RS01830 Genome accession   NZ_CP007147
Coordinates   380885..381250 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa YL84     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375885..386250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AI22_RS01815 (AI22_01810) pilK 377229..378104 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  AI22_RS01820 (AI22_01815) pilJ 378165..380213 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  AI22_RS01825 (AI22_01820) - 380298..380834 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  AI22_RS01830 (AI22_01825) pilH 380885..381250 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  AI22_RS01835 (AI22_01830) pilG 381297..381704 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  AI22_RS01840 (AI22_01835) gshB 381959..382912 (+) 954 WP_003100943.1 glutathione synthase -
  AI22_RS01845 (AI22_01840) - 383059..383952 (+) 894 WP_003084580.1 TonB family protein -
  AI22_RS01850 (AI22_01845) - 384001..384570 (+) 570 WP_025324560.1 YqgE/AlgH family protein -
  AI22_RS01855 (AI22_01850) ruvX 384570..385004 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  AI22_RS01860 (AI22_01855) pyrR 385116..385628 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=102489 AI22_RS01830 WP_003084587.1 380885..381250(-) (pilH) [Pseudomonas aeruginosa YL84]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=102489 AI22_RS01830 WP_003084587.1 380885..381250(-) (pilH) [Pseudomonas aeruginosa YL84]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment