Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABW635_RS03175 Genome accession   NZ_CP162310
Coordinates   629707..631509 (+) Length   600 a.a.
NCBI ID   WP_003100091.1    Uniprot ID   A0A1J0MY34
Organism   Streptococcus iniae strain ZQ2205     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 627745..628850 629707..631509 flank 857


Gene organization within MGE regions


Location: 627745..631509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW635_RS03170 (ABW635_03170) - 628935..629681 (+) 747 Protein_562 competence protein CoiA family protein -
  ABW635_RS03175 (ABW635_03175) pepF 629707..631509 (+) 1803 WP_003100091.1 oligoendopeptidase F Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69719.83 Da        Isoelectric Point: 5.0039

>NTDB_id=1024857 ABW635_RS03175 WP_003100091.1 629707..631509(+) (pepF) [Streptococcus iniae strain ZQ2205]
MSDNRSHLEEKYTWDLSTIFASDRDWEMELNVLVKQVEEAKKWAGHLVESASNLLTITEIELDLSRRIETVYVYAHMKND
QDTTVAKYQEYQAKASALYAKFSEVFSFYEPEFMALEADKFQQFLKEESKLNDYRHFFDKLLHSKKHVLSQAEEELLAGA
QEIFNGAEETFSIFDNADVIFPTVMDDKGQEVEITHGNFISLMESKNRKVRQDAYEGLYSTYEQFQHTYAKTLQTNVKVQ
NFKARVHKYDSARHAAMSANFIPESVYDTLLTAVHKHLPLLHRYLKLRQEILGLNQLKMYDVYTPLSATDLSIPYDQAIE
KAEKVLSIFGDEYAKHVHHAFADRWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNMFTLVHETGHSLHSTFTRQT
QPYVYGDYSIFLAEIASTTNENILTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGQVLTSEF
LNTLYADLNEKYYGLSKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLANKIVHGEQEDINRYLDYLKAGNSDYPL
NVIAKAGVDMTNETYLNEAFAVFEERLTELEKLVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1024857 ABW635_RS03175 WP_003100091.1 629707..631509(+) (pepF) [Streptococcus iniae strain ZQ2205]
ATGTCAGATAATCGTAGCCATTTAGAAGAAAAATATACTTGGGATTTAAGCACTATTTTTGCTAGTGATAGAGACTGGGA
AATGGAGCTTAATGTACTTGTTAAGCAAGTAGAAGAAGCTAAAAAATGGGCAGGACATTTAGTAGAGTCTGCTAGTAATT
TATTAACTATTACTGAGATTGAGTTGGACTTGTCACGAAGAATTGAGACTGTCTATGTCTATGCTCATATGAAAAATGAC
CAGGATACTACTGTAGCCAAATATCAAGAATACCAAGCAAAAGCATCGGCTTTATATGCTAAATTTAGTGAAGTCTTTTC
ATTTTATGAACCAGAATTTATGGCACTTGAAGCAGATAAGTTTCAACAATTCCTTAAAGAAGAATCAAAATTAAATGATT
ATAGACATTTCTTTGACAAACTGTTACATAGTAAAAAGCATGTTTTGTCTCAAGCAGAAGAAGAGCTATTGGCTGGTGCA
CAAGAAATTTTTAATGGTGCTGAAGAAACATTTAGTATTTTTGACAATGCCGATGTGATTTTTCCAACAGTTATGGATGA
CAAAGGCCAAGAAGTGGAAATCACGCATGGAAACTTTATCAGTTTGATGGAATCCAAAAACCGTAAGGTGCGTCAAGATG
CTTATGAAGGTCTTTATAGTACCTATGAACAATTCCAACACACTTATGCTAAAACATTGCAAACAAATGTTAAGGTTCAA
AATTTCAAAGCACGTGTTCATAAATATGATTCAGCTCGTCATGCAGCTATGTCAGCAAACTTTATTCCAGAATCTGTTTA
TGATACTCTTCTAACAGCAGTTCATAAGCATTTGCCACTGTTACATCGTTATTTAAAGCTACGCCAGGAAATTCTCGGTC
TTAATCAGTTAAAAATGTATGATGTCTACACGCCACTTTCTGCAACAGATTTATCGATTCCTTATGATCAAGCTATTGAA
AAAGCAGAAAAAGTCTTATCTATTTTTGGTGACGAATATGCTAAACATGTTCATCATGCTTTTGCAGATCGTTGGATTGA
TGTGCATGTTAATAAAGGAAAACGTTCAGGTGCCTATTCAGGTGGTTCATATGATACGAATGCCTTTATGCTCTTGAATT
GGCAAGATAATTTGGATAATATGTTTACTCTGGTTCACGAGACTGGTCATAGTTTACATTCAACCTTTACTCGTCAAACA
CAGCCTTATGTTTATGGTGATTATAGTATTTTCTTGGCGGAGATTGCTTCAACGACTAATGAAAATATTCTGACAGAAGC
TTTATTGAATGAGGTAGAAGACGACAAAGAGCGTTTTGCAATTTTAAATCATTATCTTGATGGTTTCCGTGGAACTGTTT
TCCGTCAGACACAATTTGCTGAATTTGAACATGCTATTCATCAAGCAGATCAAAATGGACAAGTGCTTACAAGTGAATTC
CTTAACACCCTTTATGCTGATTTAAATGAAAAGTATTATGGCTTATCTAAAGAAGACAACCATTTTATTCAATACGAATG
GGCTCGTATTCCTCATTTCTATTACAATTACTATGTTTACCAATATGCAACTGGCTTTGCTGCGGCTAGCTATTTAGCCA
ATAAAATTGTTCATGGTGAGCAAGAAGACATAAACCGTTATTTAGACTATCTTAAAGCTGGAAATTCGGATTACCCATTA
AATGTTATTGCTAAGGCTGGTGTTGATATGACGAATGAGACTTACCTTAACGAAGCATTTGCAGTTTTTGAGGAACGTTT
AACTGAACTTGAAAAACTGGTTGAAAAAGGTGCGCATTTGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0MY34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.667

100

0.707

Multiple sequence alignment