Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB1F57_RS12195 Genome accession   NZ_CP162268
Coordinates   2421159..2422526 (-) Length   455 a.a.
NCBI ID   WP_367986361.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2416159..2427526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS12175 (AB1F57_12175) - 2416372..2417214 (-) 843 WP_170242432.1 transketolase -
  AB1F57_RS12180 (AB1F57_12180) - 2417216..2418562 (-) 1347 WP_170242431.1 PTS ascorbate transporter subunit IIC -
  AB1F57_RS12185 (AB1F57_12185) - 2418605..2418889 (-) 285 WP_105137479.1 PTS sugar transporter subunit IIB -
  AB1F57_RS12190 (AB1F57_12190) - 2418891..2420930 (-) 2040 WP_367985799.1 transcription antiterminator -
  AB1F57_RS12195 (AB1F57_12195) radA 2421159..2422526 (-) 1368 WP_367986361.1 DNA repair protein RadA Machinery gene
  AB1F57_RS12200 (AB1F57_12200) - 2422533..2422976 (-) 444 WP_172005291.1 dUTP diphosphatase -
  AB1F57_RS12205 (AB1F57_12205) - 2423017..2423397 (-) 381 WP_367985800.1 hypothetical protein -
  AB1F57_RS12210 (AB1F57_12210) - 2423604..2425388 (-) 1785 WP_367985801.1 ABC transporter ATP-binding protein -
  AB1F57_RS12215 (AB1F57_12215) - 2425389..2427095 (-) 1707 WP_170239199.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49758.26 Da        Isoelectric Point: 6.5145

>NTDB_id=1024714 AB1F57_RS12195 WP_367986361.1 2421159..2422526(-) (radA) [Streptococcus sp. ZY1909104]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINESAKLGFTKVYAPKNSLSGIKVPKEITVIGVTTIGEVLQKVFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1024714 AB1F57_RS12195 WP_367986361.1 2421159..2422526(-) (radA) [Streptococcus sp. ZY1909104]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCTTGCGAGTACCACTCGCCCAAGTACCTGGGGCGCTGTCC
TAACTGTGGTTCTTGGTCTAGCTTTGTTGAAGAAGTCGAAGTGGCGGAGGTCAAAAATGCCCGCGTCAGCCTGACTGGTG
AGAAAACCCGTCCTATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGGAAGTCCACCCTGCT
CCTGCAAGTATCGACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATTGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACTATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAACGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGATACAGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTACGGGCGGTCAAAAACCGTTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTGGAAGAGCGTTTGGACGGAGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCCATCCTTGCGGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTATCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACTAACCCACAAGAGTGCTTTATTGGCGAGATTGGTCTGACAGGGGAA
ATCCGCCGTGTCAATCGGATTGAACAACGGATTAACGAATCCGCCAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGAGCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAGGTGT
TTGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.144

100

0.624

Multiple sequence alignment