Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AB1F57_RS12040 Genome accession   NZ_CP162268
Coordinates   2377224..2377937 (-) Length   237 a.a.
NCBI ID   WP_105138709.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2372224..2382937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS12015 (AB1F57_12015) - 2372558..2372950 (-) 393 WP_167785142.1 DUF1310 family protein -
  AB1F57_RS12020 (AB1F57_12020) - 2373289..2373933 (-) 645 WP_105138705.1 GNAT family N-acetyltransferase -
  AB1F57_RS12025 (AB1F57_12025) - 2373952..2376285 (-) 2334 WP_167785141.1 endonuclease MutS2 -
  AB1F57_RS12030 (AB1F57_12030) - 2376317..2376862 (-) 546 WP_105111744.1 CvpA family protein -
  AB1F57_RS12035 (AB1F57_12035) - 2376865..2377170 (-) 306 WP_167785140.1 hypothetical protein -
  AB1F57_RS12040 (AB1F57_12040) treR 2377224..2377937 (-) 714 WP_105138709.1 trehalose operon repressor Regulator
  AB1F57_RS12045 (AB1F57_12045) treP 2378143..2380161 (+) 2019 WP_167785139.1 PTS system trehalose-specific EIIBC component -
  AB1F57_RS12050 (AB1F57_12050) treC 2380235..2381860 (+) 1626 WP_167785138.1 alpha,alpha-phosphotrehalase -
  AB1F57_RS12055 (AB1F57_12055) - 2381925..2382287 (+) 363 WP_367985788.1 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27434.39 Da        Isoelectric Point: 8.9008

>NTDB_id=1024713 AB1F57_RS12040 WP_105138709.1 2377224..2377937(-) (treR) [Streptococcus sp. ZY1909104]
MKKYQEIYNDLKEKIRTNTYPAETSLPTEQRLQEIYGVSRDTVRKALSMLTERGMIQKVQGRGSLVLKQEMLNFPVSGLT
SYQELAESLQLETKTEVVSLDQIVISSNLANLTGFEPHSKVWKVVRTRYIDGKVSVVDTDYLSADIVPSITKEIAASSIY
NYLEKTLKLDIAYAQKEITVEPTSREERELMKNEDDYLVLIKSRVYLGDTKQFQYTESKHKIDKFRFVDFARRKHSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1024713 AB1F57_RS12040 WP_105138709.1 2377224..2377937(-) (treR) [Streptococcus sp. ZY1909104]
ATGAAGAAATACCAGGAAATTTACAATGACTTAAAGGAAAAAATCCGTACAAATACCTACCCTGCTGAAACCAGTCTGCC
GACCGAGCAGCGTCTGCAAGAAATTTACGGTGTCAGTCGTGATACTGTCCGCAAGGCCCTGTCTATGTTGACAGAAAGAG
GTATGATTCAGAAAGTTCAGGGCCGAGGTTCCCTAGTTCTCAAGCAAGAAATGCTGAATTTTCCTGTTTCTGGTCTGACT
TCCTACCAGGAATTGGCTGAGTCTTTGCAGCTGGAGACCAAGACAGAAGTAGTCAGTCTGGATCAGATTGTTATCAGCAG
CAACTTGGCGAATTTGACTGGGTTTGAACCTCATAGCAAGGTCTGGAAAGTTGTCCGTACACGTTATATTGATGGCAAGG
TGTCAGTTGTGGATACTGACTACCTGTCTGCGGATATTGTGCCGAGTATTACCAAGGAAATTGCGGCATCTTCCATTTAC
AATTATCTTGAGAAGACCCTCAAGCTGGATATTGCCTATGCCCAAAAGGAAATTACTGTTGAGCCGACCAGTCGTGAGGA
GCGAGAGCTCATGAAAAATGAAGATGATTATCTGGTTCTCATCAAATCCCGCGTCTATCTGGGAGATACCAAGCAATTCC
AATACACTGAAAGCAAGCACAAAATCGACAAATTCCGCTTTGTAGACTTTGCGCGTAGAAAACACTCTATATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511

Multiple sequence alignment