Detailed information NTG1024707

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AB1F57_RS10990
• Genome accession: NZ_CP162268
• Coordinates: 2176460..2178562 (-)
• Length: 700 a.a.
• NCBI ID: WP_167785734.1
• Uniprot ID: -
• Organism: Streptococcus sp. ZY1909104
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2171460..2183562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1F57_RS10980 (AB1F57_10980)	glgP	2172511..2174775 (-)	2265	WP_167785735.1	glycogen/starch/alpha-glucan family phosphorylase	-
AB1F57_RS10985 (AB1F57_10985)	malQ	2174768..2176276 (-)	1509	WP_105137310.1	4-alpha-glucanotransferase	-
AB1F57_RS10990 (AB1F57_10990)	clpC	2176460..2178562 (-)	2103	WP_167785734.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AB1F57_RS10995 (AB1F57_10995)	-	2178876..2179286 (-)	411	WP_167785733.1	peptide deformylase	-
AB1F57_RS11000 (AB1F57_11000)	-	2179359..2180087 (-)	729	WP_167785732.1	MerR family transcriptional regulator	-
AB1F57_RS11005 (AB1F57_11005)	-	2180157..2180855 (-)	699	Protein_2147	ion transporter	-
AB1F57_RS11010 (AB1F57_11010)	-	2180857..2181945 (-)	1089	WP_167785792.1	nucleotidyltransferase	-
AB1F57_RS11015 (AB1F57_11015)	-	2181942..2182688 (-)	747	WP_367985745.1	class I SAM-dependent methyltransferase	-
AB1F57_RS11020 (AB1F57_11020)	rsfS	2182814..2183170 (-)	357	WP_167785730.1	ribosome silencing factor	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 77468.44 Da
• Isoelectric Point: 4.9036

>NTDB_id=1024707 AB1F57_RS10990 WP_167785734.1 2176460..2178562(-) (clpC) [Streptococcus sp. ZY1909104]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAIYRQTGRLPQTEEVAQTQEKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIALPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIENHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKGLKNRLATNVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMEEGQEEEPDIMDRIAPFFRPEFLNRFNAVIEFKHLDKENLKAIVDLMLAQVNKTLAKKGIHLEVTEAA
KELLMEAGYDKAMGARPLRRVIENQIRDQVTDYYLDHIDAKELVADLIDQKIQISEQRFA

Nucleotide

• Length: 2103 bp

>NTDB_id=1024707 AB1F57_RS10990 WP_167785734.1 2176460..2178562(-) (clpC) [Streptococcus sp. ZY1909104]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGATATTTTCAATCAACTCATGGGCAACATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTCGCTATATACCGTCAAACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACACAGGAAAAAGGTCAGATAAAGTCAGATGGAATACTAGCAAAACTGGGTCGCAAT
TTGACCCAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGTCGGACTAAGAATAATCCTGTTCTGGTCGGTGATGCAGGTGTTGGTAAAACAGCGGTAGTGGAAGGTTTGGCTC
AAGCTATTGTCAATGGTGATGTGCCAGCGGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGATTGGAAGCT
GGGACTCAGTATCGTGGAGCTTTTGAGGAAAATGTGCAAAACCTAGTTGATGAAGTCAAAAAAGCTGGAAATATCATCCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGTGGAGACTCAGGTTCTAAGGGCTTAGCAGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACGCAGGACGAATACCGCAATACCATTCACAAG
AACGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTTAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCTCACCACAATATCGCCTTGCCTGACGAAGTCTTACGAGCTGCGGTTGATTATTCTGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCCATTGACCTAGTCGATGTGACCGCTGCTCACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCCTGGAAGCAGAAATGGCTGAGGCAAAACAGTTACAGTTGGAAGCTGCTGAGAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAGGTCCGTATTGATAAGCTACAAAAACAGATTGAAAATCATACGGAGCAACAGAAAG
TAGTGGCGACCGTCAATGATGTGGCTCAGGCGGTTGAACGAATGACAGGCATCCCAGTCTCACAAATGGGGGCTTCAGAT
ATTGAGCGTCTAAAAGGACTCAAAAATCGTTTAGCTACAAACGTTATTGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCGATTCGTCGTAATCGTGCTGGCTTTGACGATGGCAATCGCCCAATTGGTTCCTTCCTTTTTGTCGGACCAACTGGTG
TCGGCAAGACCGAGTTGGCCAAACAGCTGGCACTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCC
GAGTACAGCGACCGCACAGCTGTTTCCAAATTAATCGGTACCACAGCTGGTTACGTTGGTTATGATGACAATTCCCATAC
TCTTACCGAGCGCGTCCGCCGCAATCCTTACTCCATTGTTCTCTTGGATGAGATTGAAAAAGCAGATCCACAAGTAATTA
CCCTCCTCTTGCAAGTGCTGGATGATGGGCATTTGACTGATGGACAGGGAAACCAAGTCAACTTTAAAAATACTATTATC
ATCGCTACCTCTAATGCAGGTTTTGGTTACGGTATGGAAGAAGGTCAAGAAGAAGAGCCAGACATCATGGACCGCATTGC
ACCATTCTTTCGTCCGGAGTTCCTCAACCGTTTCAATGCAGTTATAGAATTTAAACATCTGGACAAGGAAAATCTAAAAG
CTATTGTTGATTTGATGTTAGCCCAGGTCAATAAGACCCTAGCTAAAAAAGGTATTCACTTAGAAGTGACTGAGGCAGCA
AAAGAGTTGTTGATGGAAGCAGGCTATGACAAGGCCATGGGTGCTCGACCACTCCGCCGTGTCATCGAAAATCAAATCCG
TGATCAAGTAACGGACTATTATTTGGACCATATTGATGCCAAAGAATTGGTCGCAGATCTGATCGACCAGAAAATCCAAA
TCAGCGAGCAAAGGTTTGCCTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (257-351)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-600)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-677)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.867	100	0.493
clpE	Streptococcus mutans UA159	51.108	90.286	0.461
clpE	Streptococcus pneumoniae D39	49.616	93	0.461
clpE	Streptococcus pneumoniae TIGR4	49.616	93	0.461
clpE	Streptococcus pneumoniae R6	49.616	93	0.461
clpE	Streptococcus pneumoniae Rx1	49.616	93	0.461
clpC	Bacillus subtilis subsp. subtilis str. 168	45.994	89.143	0.41
clpC	Streptococcus mutans UA159	43.851	88.286	0.387
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.639	88.714	0.387
clpC	Streptococcus pneumoniae D39	43.528	88.286	0.384
clpC	Streptococcus pneumoniae Rx1	43.528	88.286	0.384
clpC	Streptococcus thermophilus LMD-9	43.04	89.286	0.384
clpC	Streptococcus pneumoniae TIGR4	43.366	88.286	0.383
clpC	Streptococcus thermophilus LMG 18311	42.88	89.286	0.383