Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AB1F57_RS08070 Genome accession   NZ_CP162268
Coordinates   1594585..1595418 (-) Length   277 a.a.
NCBI ID   WP_367985594.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1589585..1600418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS08055 (AB1F57_08055) uidA 1589946..1591745 (-) 1800 WP_105137259.1 beta-glucuronidase -
  AB1F57_RS08060 (AB1F57_08060) - 1591761..1592789 (-) 1029 WP_105137260.1 sugar kinase -
  AB1F57_RS08065 (AB1F57_08065) - 1592846..1594399 (-) 1554 WP_105137261.1 MFS transporter -
  AB1F57_RS08070 (AB1F57_08070) endA 1594585..1595418 (-) 834 WP_367985594.1 DNA/RNA non-specific endonuclease Machinery gene
  AB1F57_RS08075 (AB1F57_08075) - 1595447..1595638 (-) 192 WP_105111683.1 DNA-directed RNA polymerase subunit beta -
  AB1F57_RS08080 (AB1F57_08080) murA 1595631..1596914 (-) 1284 WP_105137264.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AB1F57_RS08085 (AB1F57_08085) - 1596929..1597159 (-) 231 WP_105111681.1 DUF1146 family protein -
  AB1F57_RS08090 (AB1F57_08090) - 1597222..1597638 (-) 417 WP_105111680.1 F0F1 ATP synthase subunit epsilon -
  AB1F57_RS08095 (AB1F57_08095) atpD 1597648..1599054 (-) 1407 WP_105111679.1 F0F1 ATP synthase subunit beta -
  AB1F57_RS08100 (AB1F57_08100) - 1599154..1600029 (-) 876 WP_105137265.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 30401.56 Da        Isoelectric Point: 6.2360

>NTDB_id=1024700 AB1F57_RS08070 WP_367985594.1 1594585..1595418(-) (endA) [Streptococcus sp. ZY1909104]
MNNKTKKLSTSLLSLLVTILVVGGGYFFNQPSSTSQDLSYYVNQSSASQSTPDKELASSVLTDEAKKQLGGSIQWNGAGA
FIINNNKTNLDASVSSMPYADNKTKRVQGEEIPTIANALMAKSTRQYKDRDQIGQGRTSWTPAGWHQVHDLPGEYDHAVD
RGHLLGYALIGGLDGFDASTSNPKNIATQTAWSNQAYEDYSTGQNYYETKVRRALDKNKRVRYRVTLIYADDDDLLALGS
HLEAKSSDGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 834 bp        

>NTDB_id=1024700 AB1F57_RS08070 WP_367985594.1 1594585..1595418(-) (endA) [Streptococcus sp. ZY1909104]
ATGAATAATAAAACGAAAAAACTGTCGACTAGTTTGCTGAGCCTGCTGGTGACTATTTTGGTGGTCGGTGGAGGTTACTT
TTTTAATCAGCCGTCATCTACAAGTCAGGATTTGTCCTACTATGTCAATCAGTCCAGTGCAAGTCAATCAACACCCGACA
AGGAGTTGGCGTCCAGTGTATTAACGGATGAGGCCAAGAAACAACTGGGTGGCTCTATCCAATGGAATGGGGCCGGTGCC
TTCATTATCAATAATAATAAAACCAACTTGGATGCGTCAGTTTCCAGTATGCCTTATGCGGATAATAAGACCAAGCGGGT
GCAGGGCGAGGAGATTCCAACTATCGCTAATGCCCTCATGGCTAAATCTACGCGTCAGTACAAGGACCGTGATCAGATAG
GCCAAGGGCGAACCTCCTGGACGCCGGCTGGTTGGCATCAGGTTCATGATTTGCCAGGAGAATACGACCATGCGGTGGAC
CGTGGGCACTTGCTGGGTTATGCCTTGATTGGTGGCTTAGACGGATTTGACGCCTCAACCAGCAATCCCAAGAATATTGC
CACTCAAACGGCCTGGTCCAATCAGGCCTATGAGGATTATTCTACTGGGCAAAACTACTATGAAACAAAAGTCCGCAGGG
CCTTGGACAAGAACAAACGTGTCCGCTACCGTGTCACACTGATCTATGCGGATGATGATGACCTGCTTGCTCTAGGAAGT
CACCTGGAGGCTAAATCGTCAGACGGTAGCCTGGAATTCAACGTCTTTGTGCCAAATGTCCAGAGCGGACTCAGTATCAA
CTACCATAGTGGTGAGATCACGGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(79-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.961

91.697

0.596
  endA Streptococcus pneumoniae D39

64.961

91.697

0.596
  endA Streptococcus pneumoniae R6

64.961

91.697

0.596
  endA Streptococcus pneumoniae TIGR4

64.961

91.697

0.596

Multiple sequence alignment